Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00639
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 53 2e-07
03_04_0125 - 17487746-17487847,17488025-17488555,17488834-174891... 32 0.31
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 29 2.2
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 28 5.0
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 5.0
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 28 6.6
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408... 28 6.6
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 27 8.7
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 52.8 bits (121), Expect = 2e-07
Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Frame = +2
Query: 5 QGDIQIE-GFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK 175
QG I ++ G NPSAE DEG D VDIV RL E F DKK + ++K Y+K
Sbjct: 38 QGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIK 96
Query: 176 KLVAKLEEKAPDQVEVFKTNMNKVMKASSAGLRNFSSLLG 295
L AKL+ ++ E FK N+ K L++ +G
Sbjct: 97 NLSAKLD---AEKQEEFKKNIEGATKYLLGKLKDLQFFVG 133
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +1
Query: 238 EQSNESILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 402
E + + +LG+ K+LQFF GESM DG + Y+ DG P ++F HGL+E K
Sbjct: 115 EGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGLKEVK 167
>03_04_0125 -
17487746-17487847,17488025-17488555,17488834-17489102,
17489161-17489257,17491060-17491161,17491235-17491367,
17491589-17491681,17491756-17491844,17493578-17493700,
17496908-17497004,17497440-17497639
Length = 611
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 428 SIIPNWRLDTFVFLFIYQSCPHPGRNWFSHHKAEQFCILKK 550
S+ NWR+ + V F+ C H W H E+ +LK+
Sbjct: 257 SLPQNWRIYSSVASFLQHVCDHKEEEWKRHILEEEIAVLKR 297
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 131 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKASSAGLRNFS 283
G +K TL L++Y+ +V A L+ +Q+E FK +NKV + LR FS
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVFALKT--LRLFS 1190
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 14 IQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKK 142
+ I N S EE +E ++A VD+ LN +E +G+KK
Sbjct: 711 VSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 206 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 108
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 358 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 272
F YH +Y+ SW C H N ++ Q + +P
Sbjct: 264 FLYHGRMYVSSWHICFHSNVFSKQIKVMLP 293
>07_01_0549 +
4082672-4082731,4083424-4083489,4083628-4083674,
4083757-4083802,4083905-4083985,4084105-4084147,
4084258-4084307,4084392-4084473,4084538-4084587,
4084687-4084760,4084870-4084921,4085034-4085459,
4085816-4086403
Length = 554
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 131 GDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKASSAGLRNFSS 286
G K Y LK M +L+ +L EK D EV N ++V K+ + R SS
Sbjct: 292 GTAKDYQELLKQPMDELLGQLTEKVVD--EVIHGNHSRVTKSPAPTPRRASS 341
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 386 PCL-KNIMIGICVPSKSLYSIMATMPSQSMDSPV 288
PCL K+ GI P+K ++ TMPS S + +
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKI 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,234,770
Number of Sequences: 37544
Number of extensions: 266426
Number of successful extensions: 654
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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