Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00639
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.044
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     30   1.2  
SB_28262| Best HMM Match : Sarcoglycan_1 (HMM E-Value=0.95)            28   5.0  
SB_16704| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 11  DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAK 190
           D  + G N SAE+A +  +    +G ++V+ +RLVE   +   K      K Y+KK+   
Sbjct: 47  DENLIGGNKSAEDACDDVEDGCTTGCNVVMANRLVE-IPYKTFKELLAEFKPYIKKVKEH 105

Query: 191 L-EEKAPDQ 214
           + EE  PD+
Sbjct: 106 MKEEGCPDE 114


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/86 (25%), Positives = 45/86 (52%)
 Frame = +2

Query: 29   FNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAP 208
            +N   ++  E    A E+ +       ++E++A  +KK++T   +  ++K+  K+EE+  
Sbjct: 1047 YNDINDKCAELMKRANEATIRDARRREILESWA--NKKNHT---ESQIEKVREKVEEEKA 1101

Query: 209  DQVEVFKTNMNKVMKASSAGLRNFSS 286
             +   +KT  +K+ +A SAG   F S
Sbjct: 1102 KEPNDYKTAKDKLDRAQSAGESTFKS 1127


>SB_28262| Best HMM Match : Sarcoglycan_1 (HMM E-Value=0.95)
          Length = 255

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 422 NNSIIPNWRLDTFVFLFIYQSCPHPGRNW-FSH 517
           +NSI  N  +  FVF  +++SC    R+W FSH
Sbjct: 169 SNSIPSNTIIINFVFAALHRSCLRQKRSWNFSH 201


>SB_16704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 206 PDQVEVFKTNMNKVMKASSAGLRNFSSLLGSPW 304
           P++VE  +TN+ K+ +   A +RNF+   G  +
Sbjct: 74  PEEVECLQTNLEKLSEKCRAVIRNFTEQEGEDY 106


>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 374 NIMIGICVPSKSLYSIMATMPSQSMD 297
           N+ I +CVPS S+  +   MPS+  D
Sbjct: 633 NLHIYLCVPSTSVLKLTIIMPSRQFD 658


>SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1547

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +2

Query: 14   IQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKD 166
            IQIE     A   DE      E  +     H  +ET+AFG   S +L +KD
Sbjct: 1369 IQIERDLIRATNRDEDDIFRSEEMISPTTTHVSLETFAFGSLYSISLSMKD 1419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,559,956
Number of Sequences: 59808
Number of extensions: 305393
Number of successful extensions: 637
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)