Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00639
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05540.1 68416.m00607 translationally controlled tumor family... 58 4e-09
At3g16640.1 68416.m02127 translationally controlled tumor family... 56 2e-08
At1g73210.2 68414.m08473 expressed protein 31 0.77
At1g73210.1 68414.m08472 expressed protein 31 0.77
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P... 30 1.3
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 30 1.3
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 30 1.3
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 28 4.1
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom... 28 5.4
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 27 7.2
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR... 27 7.2
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 27 7.2
At4g16150.1 68417.m02450 calmodulin-binding protein similar to a... 27 9.5
At1g42710.1 68414.m04932 hypothetical protein 27 9.5
>At3g05540.1 68416.m00607 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 156
Score = 58.0 bits (134), Expect = 4e-09
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Frame = +2
Query: 17 QIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAK 190
++EG NPS EE DEG D VDI+ RL E +F DKK + +++K Y+K+L K
Sbjct: 30 EVEGKNPSGEEGGEDEGVDDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPK 88
Query: 191 LEEKAPDQVEVFKTNMNKVMKASSAGLRNFSSLLG 295
L+ + E+FK ++ K + L++F +G
Sbjct: 89 LDS---ENQELFKKHIESATKFLMSKLKDFQFFVG 120
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +1
Query: 160 QRLYEKISSKIGREGA*PS*SI*NKH-EQSNESILGRFKELQFFTGESMDC-DGMVAMME 333
+R +++S K+ E + KH E + + ++ + K+ QFF GESM+ +G +
Sbjct: 79 KRYIKQLSPKLDSENQ----ELFKKHIESATKFLMSKLKDFQFFVGESMEGEEGSLVFAY 134
Query: 334 YRDFDGTQIPIMMFFKHGLEEEK 402
YR +G P ++ +GL+E K
Sbjct: 135 YR--EGATDPTFLYLAYGLKEIK 155
>At3g16640.1 68416.m02127 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 168
Score = 56.0 bits (129), Expect = 2e-08
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +2
Query: 11 DIQIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLV 184
D+ I G NPSAEE DEG D + + VDIV RL E + DKK + Y+K Y+K L
Sbjct: 42 DVNI-GANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIKKYIKLLT 99
Query: 185 AKLEEKAPDQVEVFKTNMNKVMKASSAGLRNFSSLLG 295
KL E+ DQ VFK + K L +F +G
Sbjct: 100 PKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVG 133
>At1g73210.2 68414.m08473 expressed protein
Length = 312
Score = 30.7 bits (66), Expect = 0.77
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 158 LKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKASSAGLRNFSSLLGSP--WIVMAWLP*W 331
LKD + L K E+ P + T+ V+ GL S+ SP W+ +AW P +
Sbjct: 144 LKDRLGNLDFKYIERDPPHKRIPLTDKINVLVEKYPGLMTLRSVDMSPASWMAVAWYPIY 203
Query: 332 NIET 343
+I T
Sbjct: 204 HIPT 207
>At1g73210.1 68414.m08472 expressed protein
Length = 314
Score = 30.7 bits (66), Expect = 0.77
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 158 LKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKASSAGLRNFSSLLGSP--WIVMAWLP*W 331
LKD + L K E+ P + T+ V+ GL S+ SP W+ +AW P +
Sbjct: 146 LKDRLGNLDFKYIERDPPHKRIPLTDKINVLVEKYPGLMTLRSVDMSPASWMAVAWYPIY 205
Query: 332 NIET 343
+I T
Sbjct: 206 HIPT 209
>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 681
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +2
Query: 20 IEGFNPSAEEADEGTDSAVESGVDIVLNHRLV--ETYAFGDKKSYTLYLKDYMKKLVAKL 193
IE F SA + EGT + S +++ +R E A D+ + L D++ K + K
Sbjct: 522 IEPFCMSAVQR-EGTHEVISSVYELLKKYRAANAEPKALFDQANENL---DHVAKKIDKE 577
Query: 194 EEKAPDQVEVFKTNMNKVMKASSAGLRNF 280
A ++ EVF+ + + AGL+ F
Sbjct: 578 RRAAINEFEVFRDSGTRAWHVVGAGLQRF 606
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Frame = +2
Query: 8 GDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVA 187
GD+ + N + + T DI+L LVE+ DKK L KK
Sbjct: 103 GDLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTY 162
Query: 188 KL------EEKAPDQVEVFKTNMN 241
+ E+ PD E+ K M+
Sbjct: 163 GVYSDPADPEELPDYYEIIKNPMD 186
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Frame = +2
Query: 8 GDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVA 187
GD+ + N + + T DI+L LVE+ DKK L KK
Sbjct: 103 GDLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTY 162
Query: 188 KL------EEKAPDQVEVFKTNMN 241
+ E+ PD E+ K M+
Sbjct: 163 GVYSDPADPEELPDYYEIIKNPMD 186
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 23 EGFNPSAEEADEGTDSAVESG 85
EGF P+AEEAD+G S + G
Sbjct: 272 EGFLPTAEEADDGIGSMMMGG 292
>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
domain-containing protein low similarity to GLUT4
vesicle protein [Rattus norvegicus] GI:4193489; contains
Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
Length = 594
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 358 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 272
F YH +Y+ +W C H N ++ Q + VP
Sbjct: 255 FLYHGRMYVSAWHICFHSNVFSKQMKVVVP 284
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 29 FNPSAEEADEG--TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK 175
F PS E + G + S +E+ + + L R+ E FGD+ T D+M+
Sbjct: 546 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQ 596
>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1355
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +2
Query: 59 GTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLK-------DYMKKLVAKLEEKAPDQV 217
G D +SG++ + + + Y G+ + +LY + D M+ + KL P +
Sbjct: 184 GIDWRKQSGLETLAPYYISVKYFSGNPLALSLYEEMLSHMKSDKMEVKLLKLNHPPPQIM 243
Query: 218 EVFKTNMN 241
EVFK+N N
Sbjct: 244 EVFKSNYN 251
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 29 FNPSAEEADEG--TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK 175
F PS E + G + S +E+ + + L R+ E FGD+ T D+M+
Sbjct: 558 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQ 608
>At4g16150.1 68417.m02450 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from [Nicotiana tabacum]
Length = 906
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 375 FQTWSRRREILNVR 416
FQTW RRE LN+R
Sbjct: 770 FQTWKMRREFLNMR 783
>At1g42710.1 68414.m04932 hypothetical protein
Length = 206
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 235 HEQSNESI-LGRFKELQFFTGESMDC-DGMVAMMEYRDFDGT 354
H++S ES G F EL +TGE D + M + + D GT
Sbjct: 93 HDESEESANKGNFLELVKYTGEQNDATEQMAVVFRFVDKSGT 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,786,894
Number of Sequences: 28952
Number of extensions: 228566
Number of successful extensions: 639
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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