Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00636
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.1  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   3.7  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    26   3.7  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    26   3.7  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   4.9  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   6.5  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   6.5  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    25   6.5  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   6.5  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    25   6.5  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    25   8.6  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   8.6  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +3

Query: 36  EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKT 215
           EDV  E+ +    +  E  D  + ++ E + +N  P+       +     + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307

Query: 216 QM 221
            +
Sbjct: 308 NL 309


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +1

Query: 256 PDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREELAPHKG 378
           P   +  GE     P +H EL  H    H    E+   HKG
Sbjct: 327 PPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +3

Query: 3   DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 182
           D  EK V  S +    E+ QK++ D  E+ D   +  T T  K+      +   EK HQ 
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187

Query: 183 LLDGVEHFDKT 215
            ++GV++  KT
Sbjct: 188 AVEGVQNSKKT 198


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 370 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQV 507
           HKG +  +E+++  Y+  VTRK I   + P +  + SQ I+   PL +
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSI 262


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +3

Query: 18  IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 146
           + L S ED+ +  T+ S+   + +    +++HT  + K  +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 248 ILFFRRRVLHLSLVEVFNSVQEVL 177
           I++ + + LHL LV +FN   E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 159 RQRLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQ 49
           +QR+ PE  S PE+    + +N ++    + TS + Q
Sbjct: 235 QQRINPETSSVPETPVGVSAANVSNESTELATSATQQ 271


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 24  LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 119
           LP +ED+   +   SL D   + D+SQL   E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 60  QKSLFDGIEKFDSSQLKHTETQEKNPLPD 146
           Q +   G +  DSS +K T  +E  PLP+
Sbjct: 3   QTAALHGPKPMDSSHIKVTNVKELKPLPE 31


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 305 GIENFDPTKLKHTETCEKNSLPTKDVIEQE 394
           G+E   P +  H  T  +NSLP     E E
Sbjct: 380 GLEVISPKEFPHRTTSSRNSLPNNTTKELE 409


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 311 ENFDPTKLKHTETCEKNSLPTKDVIEQEKSA 403
           ENF+  + +  E  E+  L     +EQEK+A
Sbjct: 455 ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 259 DRSYRSGEGKEQIPERHRELR 321
           D S R   G  +IP+RHR+ R
Sbjct: 2   DLSSRLSSGSSRIPKRHRDYR 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,103
Number of Sequences: 5004
Number of extensions: 44038
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)