Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00636
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1016 + 13228113-13228964 32 0.41
06_02_0203 + 12986685-12988691 30 1.3
09_04_0329 + 16726501-16726750,16726843-16726930,16727280-167273... 29 2.2
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 29 2.2
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 29 2.9
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654... 29 2.9
07_03_1126 - 24166758-24166879,24166948-24167386,24167708-241678... 28 5.1
02_04_0650 + 24728700-24728725,24729582-24729660,24729802-247298... 28 5.1
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174... 28 6.7
08_01_0434 + 3809681-3810016,3810039-3811100 28 6.7
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888... 27 8.9
>03_02_1016 + 13228113-13228964
Length = 283
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 98 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHD 232
E A AH +G + A+ RRC SG P P RS T HD
Sbjct: 214 EAARAHASNGGKHAAA-RRCSSGNHQPVPRARSTTGMDSLGHGHD 257
>06_02_0203 + 12986685-12988691
Length = 668
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 135 PLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 236
P+P+ + +AA++AH N G EH K + TTT
Sbjct: 505 PVPNSNAIAADEAHGNATAG-EHDKKETAEQTTT 537
>09_04_0329 +
16726501-16726750,16726843-16726930,16727280-16727333,
16727590-16727739,16727884-16728015,16728279-16728423,
16728514-16728552,16728638-16728712,16728935-16728994,
16729120-16729184,16729519-16729609,16729806-16729820
Length = 387
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 192 RPRGSGGLSPLRQRLCPEAGSSPESRCASAG 100
R RG+ G+ LR L P A +SP ++ A+ G
Sbjct: 54 RRRGAHGVRALRPLLLPRASASPSAKTAAGG 84
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 87 KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 245
K+D + ++ E QEK K + K ++ VE K +M HT+ ++
Sbjct: 262 KYDMKKKEYKEAQEKEKTEKKKMEEVAKIWEDSKGPVEELKKKKMSHTSNTKR 314
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 15 KIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 134
K VLPS E++A ++ S GIE+ + + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>03_02_0985 - 12961787-12961984,12963177-12963337,12965332-12965489,
12966015-12966105,12966715-12966752,12966994-12967154,
12967249-12968687,12968815-12969227,12969630-12970987,
12971089-12971454,12971533-12971696,12971748-12971820,
12972967-12973113
Length = 1588
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQ-EKNPLPDKDVVAAEKAHQ 179
D EK + +DVA + K GIE D S K T + E N L D + ++
Sbjct: 927 DILEKTKRINDDDVAFHEKMKEHRAGIETLDLSGKKKTVKEWEDNRLSSMDHTSKGGDNE 986
Query: 180 NLLDGVEHFDKTQMKHTTTEEKNPL 254
NL + + K++ + ++ N L
Sbjct: 987 NLNERLSKIKKSEARPEEVQDANAL 1011
>07_03_1126 -
24166758-24166879,24166948-24167386,24167708-24167875,
24168388-24168675,24169468-24169575,24169759-24169811,
24170033-24170192,24170353-24170442,24170902-24170953,
24171156-24171283
Length = 535
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 477 SDRFASSITSLFLFLYNGNTAWAMAAYSKPRIFIQILTISHALRQ 611
S+ F +S T LFL + +A+AA S PR+ I T+ RQ
Sbjct: 399 SNTFMASATRLFLNNVTTISLYAVAAGSSPRLSIPFHTLQACKRQ 443
>02_04_0650 +
24728700-24728725,24729582-24729660,24729802-24729889,
24730216-24730297,24731083-24731278,24731432-24731816,
24733332-24734428,24734621-24734886,24735565-24735631,
24735722-24735772,24736033-24736123,24736239-24736345
Length = 844
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 474 YINIKIRRY*RDTFASNCYKVVVQADFSCSMTSFVGSEF 358
Y+NI + R D S+C++ + C+ + G EF
Sbjct: 520 YVNISLARIGDDNCCSDCFRDCLAQSLPCACAAETGGEF 558
>11_06_0021 +
19314211-19314311,19315202-19315307,19317135-19317412,
19318587-19318692,19318812-19319159,19319237-19319313,
19319392-19319516,19319884-19320135,19320314-19320336
Length = 471
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 107 EAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDE 223
E+H+DSG++ + +R R +S + S R DSDE
Sbjct: 213 ESHKDSGQKTSKNSKRARQ-DSDTSEINDSHCERGDSDE 250
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +2
Query: 110 AHRDSGEEPASGQRRCRSGESPPEPLGR 193
A GE G+RR R G SPPEP R
Sbjct: 58 ASSGGGEAGERGRRRGRLGFSPPEPPAR 85
>12_02_0768 -
22988119-22988223,22988337-22988558,22988645-22988810,
22989176-22989181,22989281-22989453,22989737-22989928,
22990034-22990211,22990302-22990444,22990666-22990755,
22990869-22990991,22991391-22991568,22992213-22992442,
22992557-22992616,22992731-22992798,22992908-22992953
Length = 659
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +1
Query: 262 RSYRSGEGKEQIPERHRELRSH*AEAHGNVREELAPHKGRH*AREISLNHYFITVTRKCI 441
R+Y S + +P REL + A A+ ++R+E A H + +++ R I
Sbjct: 496 RAYIS-TARRVVPSVPRELEEYIATAYSSIRQEEAKSNAPH---SYTTIRTLLSILRISI 551
Query: 442 SLVSPYFNIDVSQIDLRRPLQV 507
+L F+ V+Q D+ L++
Sbjct: 552 ALARLRFSETVAQSDVDEALRL 573
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,149
Number of Sequences: 37544
Number of extensions: 307071
Number of successful extensions: 1002
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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