Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00636
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    72   4e-13
Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z46343-5|CAA86458.2|  356|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   3.5  
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 38/85 (44%), Positives = 47/85 (55%)
 Frame = +3

Query: 3   DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 182
           +T EK VLP+ EDVA EK        IE FDS++L  T  +EK  LP  D +  EK H  
Sbjct: 28  ETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLE 87

Query: 183 LLDGVEHFDKTQMKHTTTEEKNPLP 257
           L D + +F    +K T T EKN LP
Sbjct: 88  LTDKINNFPSENLKKTETIEKNVLP 112



 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 36/75 (48%), Positives = 40/75 (53%)
 Frame = +3

Query: 12  EKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 191
           EKIVLPSA+D+  EK    L D I  F S  LK TET EKN LP    VA EK     L 
Sbjct: 69  EKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT----LQ 124

Query: 192 GVEHFDKTQMKHTTT 236
               FDK+ + H  T
Sbjct: 125 MAASFDKSALHHVET 139



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 25/52 (48%), Positives = 32/52 (61%)
 Frame = +3

Query: 102 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLP 257
           +LK  ET EKN LP K+ VA EK H   +  +EHFD T++  T  +EK  LP
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLP 74



 Score = 33.9 bits (74), Expect = 0.092
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +2

Query: 299 LNGIENFDPTKLKHTETCEKNSLPTKDVIEQEK 397
           ++ IE+FD TKL  T   EK  LP+ D I+QEK
Sbjct: 51  IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = +3

Query: 3   DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTET 122
           +T EK VLPS  DVA EKT +        FD S L H ET
Sbjct: 104 ETIEKNVLPSPTDVAREKTLQM----AASFDKSALHHVET 139



 Score = 32.3 bits (70), Expect = 0.28
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 308 IENFDPTKLKHTETCEKNSLPTKDVIEQEKS 400
           I NF    LK TET EKN LP+   + +EK+
Sbjct: 92  INNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 30.7 bits (66), Expect = 0.86
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 329 KLKHTETCEKNSLPTKDVIEQEK 397
           +LK  ET EKN LPTK+ + +EK
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEK 45


>Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical
           protein T23F11.3b protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 162 LRQRLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWRRL 37
           + +R  P++GSS E+  + +  +  S  R + TS SSQ+ ++
Sbjct: 70  MSRRSLPKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111


>Z46343-5|CAA86458.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.3a protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 162 LRQRLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWRRL 37
           + +R  P++GSS E+  + +  +  S  R + TS SSQ+ ++
Sbjct: 70  MSRRSLPKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 107  EAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 247
            E   +  E+    +   R  E  PEPL R      D DE  DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
           protein C05C9.3 protein.
          Length = 1225

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/66 (24%), Positives = 27/66 (40%)
 Frame = +3

Query: 30  SAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFD 209
           S       K  + L   +E   S    H + ++KN   D ++   E   Q  L+G   F+
Sbjct: 367 SCNSTIEHKEAEELISHLELESSQNSIHNDNRKKNEDYDMEISEIETITQRQLEGYGTFN 426

Query: 210 KTQMKH 227
             +MK+
Sbjct: 427 SPEMKN 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,302,425
Number of Sequences: 27780
Number of extensions: 261179
Number of successful extensions: 816
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)