Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00636
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti... 30 1.4
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 29 1.8
At1g23230.1 68414.m02906 expressed protein 29 2.4
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 29 3.2
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 28 4.2
At4g27870.1 68417.m04001 integral membrane family protein contai... 28 5.6
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ... 28 5.6
At1g19000.2 68414.m02364 myb family transcription factor similar... 28 5.6
At1g19000.1 68414.m02363 myb family transcription factor similar... 28 5.6
At5g12410.1 68418.m01459 THUMP domain-containing protein contain... 27 7.4
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 27 7.4
At1g63940.4 68414.m07242 monodehydroascorbate reductase, putativ... 27 7.4
At1g63940.3 68414.m07239 monodehydroascorbate reductase, putativ... 27 7.4
At1g63940.2 68414.m07240 monodehydroascorbate reductase, putativ... 27 7.4
At1g63940.1 68414.m07241 monodehydroascorbate reductase, putativ... 27 7.4
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 27 7.4
At5g16120.1 68418.m01883 hydrolase, alpha/beta fold family prote... 27 9.8
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 9.8
>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein contains Pfam profile
PF02493: MORN repeat
Length = 871
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +3
Query: 51 EKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT 230
EK+ K + DG+EK+ + K E +++ + ++V AE L + +E D+ K
Sbjct: 581 EKSVKPMLDGLEKWTEEKKKAYEERKEMIQQELELVEAEIC---LEEAIEDMDEELKKKE 637
Query: 231 TTEEK 245
EEK
Sbjct: 638 QEEEK 642
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 182
+ NE+ + + E E+ K+ + EK Q+K + +E+N K+V+ + +
Sbjct: 747 EENERRIKEAREKAELEQRLKATLEQEEK--ERQIKERQEREENERRAKEVLEQAENERK 804
Query: 183 LLDGVEHFD-KTQMKHTTTEEKN 248
L + +E + + ++K T +E+N
Sbjct: 805 LKEALEQKENERRLKETREKEEN 827
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 377 PLWGASSSRTFPCASA*WDRSSRC-RSGICSFPSP 276
PL+G + + P S W+R+ RC R I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 423 CYKVVVQADFSCSMT--SFVGSEFFSHVSVCFSLVGSKFSMPF 301
C++ ++ DF C F F+S V F L+ S +MPF
Sbjct: 438 CFESIIDDDFLCRACYQMFCEGFFYSSKGVNFDLICSSITMPF 480
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 108 KHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLP 257
K ET+E+ L K + ++ + +++ K+QM TEEK P P
Sbjct: 128 KKIETEEERRLRKKRELEKQRQDEKHRQQMKNSHKSQMPKGHTEEKKPTP 177
>At4g27870.1 68417.m04001 integral membrane family protein contains
Pfam PF01988: Integral membrane protein
Length = 761
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 542 GNGGVQQTPDFYSN 583
G+GG ++TPDF+SN
Sbjct: 66 GDGGTEETPDFHSN 79
>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -1
Query: 561 CCTPPLPRQCCHCTKTKINL*WTTQIDLTYINIKIRRY*RDTFASNCYKVVVQADFSCSM 382
CC PL + HC+ K NL + L + I + T C ++ + D +C +
Sbjct: 160 CCNKPLDKTYYHCSICKFNLNLPCSMMLPLLTISHMKSHEHTLTLFCTRLPMSCD-ACGL 218
Query: 381 T 379
+
Sbjct: 219 S 219
>At1g19000.2 68414.m02364 myb family transcription factor similar to
MybSt1 GI:7705206 from [Solanum tuberosum]
Length = 285
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 54 KTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 191
+ + SLFD E ++ TQE +PLP+ ++ + ++A Q D
Sbjct: 158 RRRSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204
>At1g19000.1 68414.m02363 myb family transcription factor similar to
MybSt1 GI:7705206 from [Solanum tuberosum]
Length = 285
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 54 KTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 191
+ + SLFD E ++ TQE +PLP+ ++ + ++A Q D
Sbjct: 158 RRRSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204
>At5g12410.1 68418.m01459 THUMP domain-containing protein contains
Pfam profile PF02926: THUMP domain
Length = 376
Score = 27.5 bits (58), Expect = 7.4
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 DTNEKIVLPSAEDVATEKTQKSLFDGI-EKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQ 179
D ++ +V D+ EK S +G+ ++ + ++ + E L + + V E+
Sbjct: 110 DGDKAVVSEGGNDLVNEKEIAS--EGVNDQVNEKEIASEGSCEVKQLAENETVKEEEDKG 167
Query: 180 NLLDGVEHFDKTQMKHTTTEEKNPL 254
N +G D+ K T TEE NPL
Sbjct: 168 NQKNGG---DEPPRKKTCTEEANPL 189
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 326 TKLKHTETCEKNSLPTKDVIEQEKSA 403
TKLK TE+ KNS+ K +E EK++
Sbjct: 831 TKLKDTESKLKNSMQDKTKLEAEKAS 856
>At1g63940.4 68414.m07242 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 482
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 536 CLGNGGVQQTPDFY 577
C+G GG +QTPD+Y
Sbjct: 119 CVGGGGERQTPDWY 132
>At1g63940.3 68414.m07239 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 416
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 536 CLGNGGVQQTPDFY 577
C+G GG +QTPD+Y
Sbjct: 119 CVGGGGERQTPDWY 132
>At1g63940.2 68414.m07240 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 493
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 536 CLGNGGVQQTPDFY 577
C+G GG +QTPD+Y
Sbjct: 126 CVGGGGERQTPDWY 139
>At1g63940.1 68414.m07241 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 486
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 536 CLGNGGVQQTPDFY 577
C+G GG +QTPD+Y
Sbjct: 119 CVGGGGERQTPDWY 132
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 37 KTSPLRRPRSLYSTVSRS 90
++ PL R RSLYS+VSRS
Sbjct: 229 RSRPLSRSRSLYSSVSRS 246
>At5g16120.1 68418.m01883 hydrolase, alpha/beta fold family protein
similar to monoglyceride lipase from [Homo sapiens]
GI:14594904, [Mus musculus] GI:2632162; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 351
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 117 ETQEKNPLPDKDVVAAEKAHQNLLDG 194
E EK PDK +V E A+ +LL+G
Sbjct: 294 ELYEKAKSPDKKIVLYENAYHSLLEG 319
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 479 RSICVVHYKFIFVFVQWQHCLGNGGVQQTP 568
RS CV++Y + +++ +H + GGV Q+P
Sbjct: 770 RSSCVLYYGY-GDYIRVKHMISQGGVDQSP 798
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,567,260
Number of Sequences: 28952
Number of extensions: 241182
Number of successful extensions: 844
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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