Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00635X
         (579 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   0.46 
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   2.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.6  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 370 YGAGYELPADLKTQTEFSTKMVFADARSINDHLYN 474
           YGAGY+L A  K  T  ST  + A    +N+H  N
Sbjct: 78  YGAGYDLAARRKNATRESTATLKA---WLNEHKKN 109


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 72  SSELQCERTVCARQ*GPQQGKANTQQDSRR 161
           +S+L+C+R +     GPQQ  A+  + + R
Sbjct: 64  NSDLRCKRKIQFMPYGPQQQPASVARRNAR 93


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 192 VTGSVAVIHRH 160
           VTG++ ++HRH
Sbjct: 3   VTGNLGIMHRH 13


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,665
Number of Sequences: 336
Number of extensions: 2402
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)