Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00635X
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    27   2.6  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   6.1  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   8.0  

>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 75  TKASYPVKVSHFSFSPVIDVVYQP 4
           T+   PVK  H+  SPV DV Y P
Sbjct: 219 TRCLTPVKDFHYDDSPVNDVEYHP 242


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 308 YSENSDDIQNLERELVKRAYTMEPGTNCPQT*RP 409
           +++  +DIQ+ E +L+   YT+ P T      RP
Sbjct: 424 FNQEEEDIQDTENDLLNANYTLLPLTTDKSGTRP 457


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 147 VGYLLSLAVALTDERKLFVHIVAPTKASYPVKVSHFSFSPV 25
           VG  LS    L+++   F+ I AP  +S    ++ FSFSPV
Sbjct: 209 VGCALSTDDVLSND---FLPISAPISSSLGSSIATFSFSPV 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,826
Number of Sequences: 5004
Number of extensions: 40130
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)