Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00635X
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024881-5|AAK71415.1|  668|Caenorhabditis elegans Na/ca exchang...    29   2.4  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AC024881-5|AAK71415.1|  668|Caenorhabditis elegans Na/ca exchangers
           protein 10 protein.
          Length = 668

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 376 LHSISPFYQLTLEILNVIRIFRISVGNDESSEALTILATS 257
           L SI+  Y ++ EI+NVI +  ++ G  +    LTI+A S
Sbjct: 498 LMSIAWIYTISSEIINVITMIGVATGVSQEILGLTIMAWS 537


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 311  SENSDDIQNLERELVKRAYTMEPGTNCPQT*RPRRNSAQKWSLPTQGQST 460
            +   DD+ + + EL KRA      TN P+T +    S  K +  T+  +T
Sbjct: 2267 ASKKDDVTSEKNELEKRASDAAAATNAPETNKDMDTSTPKPAPVTRSPAT 2316


>Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical
           protein T24A11.3 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 388 LPADLKTQTEFST-KMVFADARSIND-HLYNLVTGGDYINAV 507
           +P +LK  T   T KM F DA+ IND +  N   G +++N +
Sbjct: 235 VPKELKYVTTMGTEKMAFLDAKVINDIYCPNACQGRNHLNCL 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,131,388
Number of Sequences: 27780
Number of extensions: 240339
Number of successful extensions: 843
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)