Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00635X
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.6  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   2.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 579 CETSRETTSRQTPEPWLSSSCAQSHRVDVVA 487
           CE   +   +     WLS    +S R+DV++
Sbjct: 389 CELHMQPRKKNCCRSWLSKFPTRSKRIDVIS 419


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 579 CETSRETTSRQTPEPWLSSSCAQSHRVDVVA 487
           CE   +   +     WLS    +S R+DV++
Sbjct: 389 CELHMQPRKKNCCRSWLSKFPTRSKRIDVIS 419


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 63  KRLSSELQCERTVCARQ*GPQQGKAN 140
           + L + L  E++VC  + G  Q KAN
Sbjct: 20  EELKTRLHTEQSVCKTETGIDQQKAN 45


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 251 HRLLIGPVLMVT 216
           H+LLIGP + +T
Sbjct: 187 HKLLIGPSIRIT 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,026
Number of Sequences: 438
Number of extensions: 2754
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)