Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00635X
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acet... 32 0.24
At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain... 30 0.97
At5g02180.1 68418.m00139 amino acid transporter family protein b... 30 1.3
At1g33020.1 68414.m04066 F-box family protein 30 1.3
At5g25550.1 68418.m03040 leucine-rich repeat family protein / ex... 29 2.2
At5g02170.1 68418.m00138 amino acid transporter family protein b... 29 3.0
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 28 5.2
At3g04470.1 68416.m00474 expressed protein 27 6.8
At5g37310.1 68418.m04481 endomembrane protein 70, putative multi... 27 9.0
At4g28760.2 68417.m04113 expressed protein predicted protein. Ar... 27 9.0
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar... 27 9.0
At3g02885.1 68416.m00283 gibberellin-regulated protein 5 (GASA5)... 27 9.0
At2g16980.2 68415.m01957 expressed protein 27 9.0
At2g16980.1 68415.m01956 expressed protein 27 9.0
At2g10560.1 68415.m01113 hypothetical protein 27 9.0
>At3g15690.2 68416.m01989 biotin carboxyl carrier protein of
acetyl-CoA carboxylase-related contains weak similarity
to Biotin carboxyl carrier protein of acetyl-CoA
carboxylase, chloroplast precursor (BCCP)
(Swiss-Prot:Q42533) [Arabidopsis thaliana]
Length = 263
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 198 SDVTGSVAVIHRHDGNPVGY---LLSLAVALTDERKL 97
SDVTG V I R DG PVGY L+S+ + +KL
Sbjct: 226 SDVTGEVVKILREDGEPVGYNDALISILPSFPGIKKL 262
>At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing
protein similar to SP|Q06881 Biotin carboxyl carrier
protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.};
contains Pfam profile PF00364: Biotin-requiring enzyme
Length = 274
Score = 30.3 bits (65), Expect = 0.97
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 198 SDVTGSVAVIHRHDGNPVGYLLSLAVAL 115
SDV+G + I R DG PVGY +L L
Sbjct: 237 SDVSGEIVKILREDGEPVGYNDALITVL 264
>At5g02180.1 68418.m00139 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 550
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 217 VTISTGPISKRCAQTSPGLSTPP 285
+T TG + KRC ++SPG+ T P
Sbjct: 201 ITCYTGVLMKRCLESSPGIQTYP 223
>At1g33020.1 68414.m04066 F-box family protein
Length = 548
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 570 SRETTSRQTPEPWLSSSCAQSHRVDVVAARNQ 475
S ET+SR+ + W+S S + H+V +A R Q
Sbjct: 393 STETSSREDHQGWISISSRKYHQVRTIAHRQQ 424
>At5g25550.1 68418.m03040 leucine-rich repeat family protein /
extensin family protein similar to leucine-rich
repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana];
contains Pfam PF00560: Leucine Rich Repeat domains
Length = 433
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 217 VTISTGPISKRCAQTSPGLSTPPKTRRCLRIF 312
++ S+ P++ + TSP LSTPP R C ++
Sbjct: 387 ISPSSQPLAPAPSPTSPPLSTPPPARPCPPVY 418
>At5g02170.1 68418.m00138 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 526
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 217 VTISTGPISKRCAQTSPGLSTPP 285
+T TG + KRC + SPG+ T P
Sbjct: 177 ITFYTGILLKRCLENSPGIHTYP 199
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 383 TNCPQT*RPRRNSAQKWSLPTQGQSTITCTT 475
TNCP RNS + P +ST++C T
Sbjct: 778 TNCPSRVPASRNSRPTATNPRNDESTVSCNT 808
>At3g04470.1 68416.m00474 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 128 RESKYPTGFPSCLWMTATLPVTSE 199
RES+Y G LW+T P+T++
Sbjct: 238 RESEYKKGLRPVLWLTPDFPLTTD 261
>At5g37310.1 68418.m04481 endomembrane protein 70, putative
multispanning membrane protein, Homo sapiens,
EMBL:HSU94831
Length = 564
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 104 RSSVRATARESKYPTGFPSCLWMTATLP 187
+S +A R +KYP P W TLP
Sbjct: 425 KSEFQAPCRTTKYPREIPPMRWYRRTLP 452
>At4g28760.2 68417.m04113 expressed protein predicted protein.
Arabidopsis thaliana
Length = 924
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 246 LTDRPRADGNSFNAAVSDVT 187
LTD+P DG+S + + SDVT
Sbjct: 39 LTDKPHLDGSSLSRSRSDVT 58
>At4g28760.1 68417.m04112 expressed protein predicted protein.
Arabidopsis thaliana
Length = 924
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 246 LTDRPRADGNSFNAAVSDVT 187
LTD+P DG+S + + SDVT
Sbjct: 39 LTDKPHLDGSSLSRSRSDVT 58
>At3g02885.1 68416.m00283 gibberellin-regulated protein 5 (GASA5) /
gibberellin-responsive protein 5 identical to GASA5
[Arabidopsis thaliana] GI:1289320
Length = 97
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = -3
Query: 193 CNWKC--RCHPQTRRESCWVFAFPCC 122
CN KC RC + ++ C F CC
Sbjct: 39 CNSKCSFRCSATSHKKPCMFFCLKCC 64
>At2g16980.2 68415.m01957 expressed protein
Length = 461
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 291 SSLPTDILKILMTFKISSVSW*KGLILWSRVRTARRLED-PDGIQHKNGLCR 443
+SL L I TF+++++S GL+ + RV RL+D D + +G CR
Sbjct: 160 ASLSARFLSIASTFQVAAISLFIGLV-YMRVFLKERLQDADDDDEADSGGCR 210
>At2g16980.1 68415.m01956 expressed protein
Length = 408
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 291 SSLPTDILKILMTFKISSVSW*KGLILWSRVRTARRLED-PDGIQHKNGLCR 443
+SL L I TF+++++S GL+ + RV RL+D D + +G CR
Sbjct: 160 ASLSARFLSIASTFQVAAISLFIGLV-YMRVFLKERLQDADDDDEADSGGCR 210
>At2g10560.1 68415.m01113 hypothetical protein
Length = 278
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 426 KNGLCRRKVNQRSLVQLGYGRRLHQRGETVRSSTTTRAPASVATSS 563
K GL + R ++L Y + LH R + S+TT+ S AT S
Sbjct: 205 KEGLVS-SFHHRLQIELYYTKHLHHRQPNMFESSTTKVTVSEATVS 249
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,535,277
Number of Sequences: 28952
Number of extensions: 224839
Number of successful extensions: 692
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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