Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00634
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    88   4e-19
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    88   4e-19
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   4.1  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   4.1  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    24   5.4  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    24   7.1  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    24   7.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    23   9.4  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 87.8 bits (208), Expect = 4e-19
 Identities = 41/78 (52%), Positives = 55/78 (70%)
 Frame = +1

Query: 1   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 180
           AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  
Sbjct: 58  AAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSD 117

Query: 181 DGGRILTTQGRRDLDRIA 234
           +GGR ++ QG+RDLDRIA
Sbjct: 118 NGGRRISQQGQRDLDRIA 135


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 87.8 bits (208), Expect = 4e-19
 Identities = 41/78 (52%), Positives = 55/78 (70%)
 Frame = +1

Query: 1   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 180
           AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  
Sbjct: 58  AAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSD 117

Query: 181 DGGRILTTQGRRDLDRIA 234
           +GGR ++ QG+RDLDRIA
Sbjct: 118 NGGRRISQQGQRDLDRIA 135


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 15   SYLHSLTCWSQDCHQDLWW 71
            S+ + +T + Q CH++LW+
Sbjct: 1149 SFQNLVTVFCQSCHKELWY 1167


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -2

Query: 219 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 127
           VSS  C E   T     L+ +N ++C+  LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 69  TKDLGDSLDSNR*ANVNMTKDGS 1
           ++D+G +L+ N+ +N+  TK+ S
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEAS 131


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 7   ILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKA 138
           ++R+    S +G +++    GG    GVTPSH    S   A +A
Sbjct: 389 LMRNREQSSLLGQESIPLQPGGTGYTGVTPSHAANGSALAAPQA 432


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 5   PSFVIFTFAHLLESRLSPRSLVGANVMELHLHISAGHQAVLHARLCNRW 151
           P   I TF+  + +        G +V +L+L + + H   L +R C +W
Sbjct: 261 PCLYIETFSFPISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQW 309


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 80   VMELHLHISAGHQAVLHARLCNRWRH*SLLRKFRTVVAFS 199
            ++ +HL IS  H   L   L  +     +  +FRT V+FS
Sbjct: 1155 LLSIHLLISRNHDPYLMLNLILKHYLSMIYLQFRTYVSFS 1194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,439
Number of Sequences: 5004
Number of extensions: 20033
Number of successful extensions: 60
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)