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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00634
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...    95   2e-20
11_01_0645 + 5185341-5185568,5185773-5185823                           27   2.9  
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444...    27   2.9  
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    27   3.8  
12_01_0081 - 657672-657713,657993-658151,658359-658919                 27   5.0  
12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29...    27   5.0  
10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339     27   5.0  
06_03_0203 - 17863130-17863940,17864023-17864341,17864653-178647...    27   5.0  
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975...    27   5.0  
11_06_0286 + 21945699-21946213,21946255-21947542                       26   6.6  
05_01_0397 - 3129679-3130144,3130655-3131104,3132215-3132273,313...    26   8.7  
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    26   8.7  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score = 94.7 bits (225), Expect = 2e-20
 Identities = 41/81 (50%), Positives = 60/81 (74%)
 Frame = +1

Query: 1   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 180
           A+I R IY+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++   
Sbjct: 61  ASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDP 120

Query: 181 DGGRILTTQGRRDLDRIAAQV 243
            GGR++T+QGRRDLD++A +V
Sbjct: 121 KGGRLITSQGRRDLDQVAGRV 141


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 19  IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 135
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>10_08_0669 +
           19742140-19742189,19742886-19742923,19744260-19744448,
           19746402-19748188
          Length = 687

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +1

Query: 97  SHFCRSSGSIARKALQSL-----EALKLVEKVQDGGRILTTQGRRDLDRIAAQVRL 249
           SH C S  S+ R+ LQS+     EA +L  + ++  R    Q + DLD +A ++ L
Sbjct: 193 SHPCFSKNSLCRELLQSVAATLAEAAELGARCREPPRAGKLQMQSDLDALAGKLDL 248


>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 187 HRPELSQQASMPPTIAKPCVQYCLMTCRN 101
           H  +  +  + P TIA+  +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144


>12_01_0081 - 657672-657713,657993-658151,658359-658919
          Length = 253

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 246 TNLGSDSVKVSSTLCGENATTVLNFLN 166
           T +G D++ VSS LCG +A   L+ ++
Sbjct: 166 TVVGGDTIYVSSKLCGTHAFDTLDLIS 192


>12_01_0035 -
           295988-296408,296645-296813,296929-296965,297097-297173,
           297391-297631
          Length = 314

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 92  HLHISAGHQAVLHARLCNRW 151
           H HI+AG   +L +R+ N W
Sbjct: 161 HRHITAGSGTILQSRVANAW 180


>10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339
          Length = 697

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 46  KTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLV--EKVQDGGRILTTQGRRD 219
           +T   +F   +RNG   +HF  SS   A   + +LE  K V    ++ G R+    G   
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTI 307

Query: 220 LDRIA 234
           LD  A
Sbjct: 308 LDMYA 312


>06_03_0203 -
           17863130-17863940,17864023-17864341,17864653-17864716,
           17864811-17864929,17865515-17865640,17866626-17866632,
           17867421-17867562,17867720-17867738,17868082-17868292
          Length = 605

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 181 PELSQQASMPPTIAKPCVQYCLMTCRNVK 95
           P+L ++  +  T   P V++C MTCR ++
Sbjct: 379 PKLEERREILGTRLLPLVRFCHMTCRKLR 407


>05_05_0116 -
           22496535-22496576,22496974-22497058,22497468-22497545,
           22497656-22497803,22498612-22498771,22499056-22499058
          Length = 171

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/37 (32%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +1

Query: 130 RKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRIAA 237
           R AL++L+ + L ++++ DGG +L T+G    ++++A
Sbjct: 110 RTALENLDLILLCLDEIVDGGIVLETEGSVIAEKVSA 146


>11_06_0286 + 21945699-21946213,21946255-21947542
          Length = 600

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 225 VKVSSTLCGENATTVLNFLNKLQCLQRLQSLAC 127
           V +SST   ++   VL  L KLQC+ RLQ ++C
Sbjct: 478 VTLSSTPLNQDDLEVLAKLPKLQCV-RLQHISC 509


>05_01_0397 -
           3129679-3130144,3130655-3131104,3132215-3132273,
           3133136-3133305,3134655-3134771,3134980-3135166
          Length = 482

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 34  PVGVKTVTKIFGGRKRNG--VTPSHFCRSSGSIAR 132
           P G     ++ G  +R G  ++PS+F   SGS +R
Sbjct: 300 PFGTTRAARVDGDTQRRGSSISPSYFSNGSGSRSR 334


>03_03_0246 +
           15789635-15794227,15794314-15794555,15794630-15794771,
           15796089-15796272,15796349-15796696,15796753-15797450,
           15798208-15798900
          Length = 2299

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 151 EALKLVEKVQDGGRILTTQGRRDLDRIAAQVRLKASSRLSNKSLY 285
           E L    K +D  +   T  R D DR+  +V   ASS  S+ + Y
Sbjct: 598 ELLPGAVKDKDVPQSANTDDRHDFDRMGERVNTSASSESSSNNRY 642


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,137,910
Number of Sequences: 37544
Number of extensions: 150342
Number of successful extensions: 454
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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