Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00634
(337 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30) 73 6e-14
SB_49816| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.54
SB_9755| Best HMM Match : Sushi (HMM E-Value=0) 29 1.2
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 27 3.8
SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091) 27 5.0
SB_20099| Best HMM Match : UPF0137 (HMM E-Value=8.2) 27 5.0
SB_49830| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3) 26 8.7
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
Length = 92
Score = 72.9 bits (171), Expect = 6e-14
Identities = 34/61 (55%), Positives = 43/61 (70%)
Frame = +1
Query: 61 IFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRIAAQ 240
I GRK G PSHF S S+AR L+ LE +KLVEK GGR +T+QG+RD+DRIA+Q
Sbjct: 32 IRAGRKNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRIASQ 91
Query: 241 V 243
+
Sbjct: 92 I 92
>SB_49816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 29.9 bits (64), Expect = 0.54
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 124 IARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRIAAQVRLK 252
IA LQ A+ V ++ +++T GRR+LDR A++ K
Sbjct: 80 IAPNGLQYCVAMMAVSRIGACAVLMSTSGRRELDRFTAELLRK 122
>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1351
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 99 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 191
TF ++ C +GF ++G +S+G+WS
Sbjct: 21 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51
>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 99 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 191
TF ++ C +GF ++G +S+G+WS
Sbjct: 286 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 99 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 191
TF + C +GF ++G + +C +SSG+WS
Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -2
Query: 237 GSDSVKVSSTLCGENATTVLNF----LNKLQCLQRLQSL 133
G+D V S + G+NATT + F LN+ + L+ L++L
Sbjct: 2845 GTDKVHYSVVIFGDNATTPIQFNDGPLNEGELLKALENL 2883
>SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 27.1 bits (57), Expect = 3.8
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +1
Query: 64 FGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRIAAQ- 240
FGG R GVTP S+ ++ +S E+L L+++ R+ +TQ L +AQ
Sbjct: 499 FGGFSRLGVTP--------SLPHQSRRSFESLPLLQQPNSWHRV-STQMEGPLGSTSAQP 549
Query: 241 -VRLKASSRLSNKSLYFNFM 297
R L+NK L + M
Sbjct: 550 AERQTGQRNLTNKLLMMSIM 569
>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 99 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 206
T+ I C +G+A++G +++G WS S+ T
Sbjct: 913 TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948
>SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)
Length = 566
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +1
Query: 70 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRIAAQVRL 249
GRK++ T +H C G++ K + + + V+ RI R L RI R
Sbjct: 246 GRKKDHGTVTHTCEDHGNVTHKCRKGITVMSRTRLVR---RITVMSRTRVLRRITVMSRT 302
Query: 250 K 252
+
Sbjct: 303 R 303
>SB_20099| Best HMM Match : UPF0137 (HMM E-Value=8.2)
Length = 246
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 106 CRSSGSIARKALQSLEALKLVEKVQDGGRILTTQ 207
C S+G +AR+ ++ALK + V + TTQ
Sbjct: 93 CTSAGGLARELCGKIQALKELPSVDEATESSTTQ 126
>SB_49830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 26.2 bits (55), Expect = 6.6
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = +1
Query: 43 VKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDL 222
+ TV+K R+R FCRSS + + + +L + IL +R +
Sbjct: 18 ISTVSK--RERRREEPVQGAFCRSSRFTFERRGKEKDCGRLRDNASSAQAILLEIVKRKV 75
Query: 223 DRIAAQVRLKASSRLSNKS 279
R A R A SRL +S
Sbjct: 76 TRKATCARCFAGSRLPGRS 94
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -3
Query: 158 NASNDCKALRAILPDDLQKCEGVTPLRLRPPKILVTVLTP 39
N C+ D + C VT +RPP +LVT P
Sbjct: 622 NGEKQCRCNYGYRGDGVTFCNSVTAT-VRPPSVLVTTARP 660
>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 204 CGENATTVLNFLNKLQCLQRLQSLACN 124
CG TT N ++ +R S+ACN
Sbjct: 965 CGRRFTTAYNLKTHIRAHRRTNSIACN 991
>SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)
Length = 378
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +3
Query: 21 LHSLTCWSQDCHQDLWWAQT*WSYTFTFLQVIRQYCTQGF 140
L L C Q CHQ +W W +T ++ +C F
Sbjct: 46 LSRLPCCGQSCHQQCFWK---WIHTHRTERITCPHCRYVF 82
>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1408
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 65 LVGANVMELHLHISAGHQAVLHARL 139
+VG NV + HLH+S +V AR+
Sbjct: 1019 IVGLNVTQSHLHLSINTSSVSIARI 1043
>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 82 NGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRR--DLDRIAAQVRLKA 255
+G TP HFC +G + A+ L+ V+ V D G + R ++ + +R +A
Sbjct: 403 HGNTPLHFCCINGHVG-PAIVLLQCKANVDVVNDRGNTPLHEAARWNFVELVRLLLRYRA 461
Query: 256 SSRLSNK 276
S + NK
Sbjct: 462 SVIMRNK 468
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 106 CRSSGSIARKALQSLEALKLVEKVQDGGRILTTQ 207
CRS+ +AR+ ++ALK + V + TTQ
Sbjct: 93 CRSAEGLARELCGKIQALKELPSVDEATESSTTQ 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,349,769
Number of Sequences: 59808
Number of extensions: 175295
Number of successful extensions: 513
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -