Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00634
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    93   4e-20
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    93   4e-20
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    28   1.9  
U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    26   7.7  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    26   7.7  
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    26   7.7  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
 Frame = +1

Query: 1   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 180
           A++ RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  
Sbjct: 59  ASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHP 117

Query: 181 DG-GRILTTQGRRDLDRIAAQVR 246
           DG GRIL+ QGR+DLDRIA  +R
Sbjct: 118 DGKGRILSKQGRKDLDRIATSLR 140


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
 Frame = +1

Query: 1   AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 180
           A++ RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  
Sbjct: 59  ASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHP 117

Query: 181 DG-GRILTTQGRRDLDRIAAQVR 246
           DG GRIL+ QGR+DLDRIA  +R
Sbjct: 118 DGKGRILSKQGRKDLDRIATSLR 140


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = +1

Query: 25  IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTT 204
           I S +  K  T ++ G  R G  P      SGS  +K   +  A+K  EK +D GR L  
Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKLKK 199

Query: 205 QGRRDLDRIAAQVRLKASSR 264
              + + +++     K + +
Sbjct: 200 TVSKTITKLSVSESKKKTEK 219


>U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical
           protein T07H6.5 protein.
          Length = 575

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 93  TFTFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSH 194
           TF +   ++  C  GF +VG       S+G W++
Sbjct: 161 TFEYPHHVKYSCNPGFLLVGSTSRQCSSNGEWTN 194


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 25  IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD 183
           I+S    KT   IF G ++   T      +   +  KAL SL+ + LV+ VQD
Sbjct: 754 IKSQGFPKTANAIFQGEEQ---TEDDCQDALAKVFEKALVSLQGMALVQSVQD 803


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 25  IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD 183
           I+S    KT   IF G ++   T      +   +  KAL SL+ + LV+ VQD
Sbjct: 754 IKSQGFPKTANAIFQGEEQ---TEDDCQDALAKVFEKALVSLQGMALVQSVQD 803


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 38  LESRLSPRSLVGANVMEL 91
           + SRLSPRS +G N+ E+
Sbjct: 75  ISSRLSPRSRLGNNIFEM 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,753,922
Number of Sequences: 27780
Number of extensions: 126164
Number of successful extensions: 317
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)