Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00634
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.24 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   7.0  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 0.24
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 280 MTCCLACCLPLDEPGQRFCQGLV 212
           M+CC  CC  L  PG     G+V
Sbjct: 9   MSCCCWCCDNLGGPGSSSAGGVV 31


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 35  LLESRLSPRSLVGANVMELHLHISA 109
           LL++RL+P S +  ++   H H+S+
Sbjct: 268 LLKARLNPNSSLQPSLASHHSHLSS 292


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 8   SFVIFTFAHLLESRLSPRSLVGANVME 88
           +F+I  +A LL +R    + + ANV E
Sbjct: 418 AFIILQYAGLLRNRSEYLNHLRANVAE 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,884
Number of Sequences: 438
Number of extensions: 1415
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)