Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00634
(337 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 90 4e-19
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 90 4e-19
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 87 4e-18
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 30 0.44
At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 0.58
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi... 28 1.8
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 27 3.1
At4g37360.1 68417.m05291 cytochrome P450 family protein cytochro... 27 4.1
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 27 4.1
At5g46500.1 68418.m05726 expressed protein 26 7.2
At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR... 26 7.2
At1g19840.1 68414.m02489 auxin-responsive family protein similar... 26 7.2
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 25 9.5
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /... 25 9.5
At3g52600.1 68416.m05794 beta-fructosidase, putative / beta-fruc... 25 9.5
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 89.8 bits (213), Expect = 4e-19
Identities = 40/81 (49%), Positives = 56/81 (69%)
Frame = +1
Query: 1 AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 180
A++ R IY+R +GV +I+GG KRNG P HFC+SSG IAR LQ LE + +VE
Sbjct: 59 ASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDT 118
Query: 181 DGGRILTTQGRRDLDRIAAQV 243
GGR +T+ G+RDLD++A ++
Sbjct: 119 KGGRRITSSGQRDLDQVAGRI 139
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 89.8 bits (213), Expect = 4e-19
Identities = 39/84 (46%), Positives = 58/84 (69%)
Frame = +1
Query: 1 AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 180
A++ R +Y+R +GV +I+GG KRNG P HFC+SSG IAR LQ LE + +VE
Sbjct: 59 ASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDT 118
Query: 181 DGGRILTTQGRRDLDRIAAQVRLK 252
GGR +T+ G+RDLD++A ++ ++
Sbjct: 119 KGGRRITSSGQRDLDQVAGRIAVE 142
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 86.6 bits (205), Expect = 4e-18
Identities = 36/81 (44%), Positives = 56/81 (69%)
Frame = +1
Query: 1 AAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQ 180
A++ R +Y+R +GV +I+GG KRNG P HFC+SSG +AR LQ L+ + +V+
Sbjct: 59 ASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDT 118
Query: 181 DGGRILTTQGRRDLDRIAAQV 243
GGR +T+ G+RDLD++A ++
Sbjct: 119 KGGRKITSSGQRDLDQVAGRI 139
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 29.9 bits (64), Expect = 0.44
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 103 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRIAAQ 240
FCRSSG A + + ++ + + K +DG ++L RR L +I Q
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQIIRQ 189
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 29.5 bits (63), Expect = 0.58
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 187 HRPELSQQASMPPTIAKPCVQYCLM 113
H P L Q PP + C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 633
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 40 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVE--KVQDGGRILTTQGR 213
G + ++F G R+G PSHF +S A + LE K V ++ G +++ G
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301
Query: 214 RDLDRIA 234
LD A
Sbjct: 302 TLLDMYA 308
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 227 LSRSRLPCVVRMRXXXXXXXXXFNASNDCKALRAILPDDLQKCEGVTPLRLR 72
+S SRL C+ + + NA +D +DL+K G +PL L+
Sbjct: 178 ISSSRLDCLSKYQPRDDIVARNCNAGSDDTEEELSNSEDLRKVTGASPLLLK 229
>At4g37360.1 68417.m05291 cytochrome P450 family protein cytochrome
P450 monooxygenase, Arabidopsis thaliana, PID:d1029478
Length = 499
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 98 HISAGHQAVLHARLCNRWRH*SLLRKFRTVVAFSPHKVD 214
HIS G+ V+ A WR+ LR+ + FS H+++
Sbjct: 108 HISYGNSTVVSASYSEHWRN---LRRIGALEIFSAHRLN 143
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 157 LKLVEKVQDGGRILT-TQGRRDLDRIAAQVRLKASSRLS 270
+KL+E + DG RIL ++ D+I Q+R+ LS
Sbjct: 335 VKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALS 373
>At5g46500.1 68418.m05726 expressed protein
Length = 417
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 286 STMTCCLACCLPLDEPGQRFCQGLVY 209
S M L CC+PL+E QG Y
Sbjct: 178 SQMLTILDCCIPLNEGNASLAQGNYY 203
>At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1205
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 286 STMTCCLACCLPLDEPGQRFCQGLVY 209
S M L CC+PL+E QG Y
Sbjct: 1040 SQMLTILDCCIPLNEGNASLAQGNYY 1065
>At1g19840.1 68414.m02489 auxin-responsive family protein similar to
auxin-induced protein TGSAUR21 (GI:10185818) [Tulipa
gesneriana]
Length = 153
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 152 SNDCKALRAILPDDLQKCEG 93
S+ ++ R PDDLQKC G
Sbjct: 107 SDSSRSSRFTCPDDLQKCNG 126
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 110 LQKC-EGVTPLRLRPPKILVTVLTPTGE 30
L KC GV+PL + PP + + +P GE
Sbjct: 1034 LGKCPSGVSPLGVGPPGVGPVIASPPGE 1061
>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase PG1 [Glycine max]
GI:5669846; contains PF00295: Glycosyl hydrolases family
28
Length = 444
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 122 LPDDLQKCEGVTPLRLRPPKILVTVLTPTGE 30
L D C G+ PLR R KI +T G+
Sbjct: 21 LGDSEATCSGIVPLRYRYDKISITDFGGVGD 51
>At3g52600.1 68416.m05794 beta-fructosidase, putative /
beta-fructofuranosidase, putative similar to
beta-fructofuranosidase [Daucus carota] GI:18324
Length = 590
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 5 PSFVIFTFAHLLESRLSPRSLVGANVME 88
PSF F LL+ ++S RSL+ +V+E
Sbjct: 506 PSFAGFVDVGLLDGKISLRSLIDHSVVE 533
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,350,047
Number of Sequences: 28952
Number of extensions: 114417
Number of successful extensions: 299
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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