Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00633
(453 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 162 4e-39
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 104 8e-22
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 102 3e-21
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 77 1e-13
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 68 8e-11
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 66 3e-10
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 66 3e-10
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 60 2e-08
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 60 3e-08
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 59 4e-08
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 58 7e-08
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 56 4e-07
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 56 5e-07
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 55 6e-07
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 55 8e-07
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 1e-06
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 53 3e-06
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 51 1e-05
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 51 1e-05
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 50 2e-05
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 50 3e-05
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 50 3e-05
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 49 5e-05
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 47 2e-04
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 45 9e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 41 0.014
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 41 0.014
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 40 0.025
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 39 0.058
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.076
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 38 0.076
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 38 0.10
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 38 0.13
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 37 0.18
UniRef50_Q4PI89 Cluster: Transcription elongation factor SPT6; n... 37 0.18
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 36 0.31
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 36 0.41
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.41
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 36 0.54
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 35 0.71
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 35 0.94
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 35 0.94
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 34 1.2
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 34 1.2
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 34 1.6
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 34 1.6
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 33 2.2
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 33 2.9
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 33 2.9
UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, wh... 33 3.8
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 32 5.0
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 32 6.6
UniRef50_Q584A6 Cluster: Putative uncharacterized protein; n=1; ... 32 6.6
UniRef50_Q4Q475 Cluster: Pumilio protein, putative; n=3; Leishma... 32 6.6
UniRef50_A4EAB5 Cluster: Putative uncharacterized protein; n=1; ... 31 8.7
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 31 8.7
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 31 8.7
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 31 8.7
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 162 bits (393), Expect = 4e-39
Identities = 78/85 (91%), Positives = 83/85 (97%)
Frame = +1
Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
RELLTL+EKDP+RLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK
Sbjct: 58 RELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKL 117
Query: 181 GLAKSIHHARILIRQRHIRVRKQVV 255
GLAKSIHHAR+LIRQRHIRVRKQVV
Sbjct: 118 GLAKSIHHARVLIRQRHIRVRKQVV 142
Score = 84.6 bits (200), Expect = 9e-16
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = +3
Query: 255 NIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 380
NIPSFIVRLDS KHIDFSL+SP+GGGRPGRVKRKN +KGQGG
Sbjct: 143 NIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGG 184
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 104 bits (250), Expect = 8e-22
Identities = 50/78 (64%), Positives = 61/78 (78%)
Frame = +1
Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
+ELLTL+EK+P+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK
Sbjct: 48 QELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKN 107
Query: 181 GLAKSIHHARILIRQRHI 234
G KSIHH +LIRQ HI
Sbjct: 108 GTVKSIHHDHVLIRQHHI 125
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 102 bits (245), Expect = 3e-21
Identities = 51/83 (61%), Positives = 63/83 (75%)
Frame = +1
Query: 7 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 186
+L + KDPKRL EG ALLRRL +G+L Q KL++VL LK E+ LERRLQT V++ G
Sbjct: 59 MLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGF 118
Query: 187 AKSIHHARILIRQRHIRVRKQVV 255
AKSIHHAR+LIR + I+V KQVV
Sbjct: 119 AKSIHHARVLIRGKMIKVGKQVV 141
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 77.4 bits (182), Expect = 1e-13
Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 6/89 (6%)
Frame = +1
Query: 7 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMK------LDYVLGLKIEDFLERRLQTQ 168
LL L EKDP+ LFE N LLR+LV G+L E +MK + GL+I F E++LQTQ
Sbjct: 60 LLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQ 118
Query: 169 VFKAGLAKSIHHARILIRQRHIRVRKQVV 255
VF+ L KSI HA +L+ HIR+ KQVV
Sbjct: 119 VFELVLDKSIRHACVLLCHCHIRIGKQVV 147
Score = 50.0 bits (114), Expect = 2e-05
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +3
Query: 255 NIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 380
+I F V LDS KH DF GGG PG VKRKN++KG+GG
Sbjct: 148 DIAFFFVGLDSRKHTDFFRHCLNGGGYPGSVKRKNVKKGRGG 189
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 68.1 bits (159), Expect = 8e-11
Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 9/94 (9%)
Frame = +1
Query: 1 RELLTLEEKDPKRL-FEGNALLRRLVRIGVL------DEKQMK--LDYVLGLKIEDFLER 153
R + L +P+ + G +LLRRL++ G+L D++++ L+ VL L I +LER
Sbjct: 53 RARILLTSTNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLER 112
Query: 154 RLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255
RLQ +VF AGLAKS+HHAR+LI R I ++ Q+V
Sbjct: 113 RLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIV 146
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 66.1 bits (154), Expect = 3e-10
Identities = 37/87 (42%), Positives = 55/87 (63%)
Frame = +1
Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
R LL L + R L+++L R+G++++ LD +LGL E++LERRLQT V+K
Sbjct: 56 RSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKK 113
Query: 181 GLAKSIHHARILIRQRHIRVRKQVVTS 261
GLA++I+ AR LI HI + + VTS
Sbjct: 114 GLARTIYQARQLIVHGHIAIGGRRVTS 140
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 66.1 bits (154), Expect = 3e-10
Identities = 35/84 (41%), Positives = 52/84 (61%)
Frame = +1
Query: 10 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 189
+T EE+ P + +L ++G +++ ++LD +L L + LERRLQT V++ GLA
Sbjct: 63 MTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLA 118
Query: 190 KSIHHARILIRQRHIRVRKQVVTS 261
KSIHHAR LI H+ V + VTS
Sbjct: 119 KSIHHARQLIVHGHVAVAGRRVTS 142
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 60.1 bits (139), Expect = 2e-08
Identities = 30/72 (41%), Positives = 50/72 (69%)
Frame = -1
Query: 252 NLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTN 73
+LL ++N+ L DQ+S +++ L Q L LQ++ QE+ NLQ++ II+ L F Q +N++
Sbjct: 52 DLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQEIFNLQSQDIIQLLLVFRQDTNSH 111
Query: 72 QTT*KGITFEQS 37
Q++ + ITFEQS
Sbjct: 112 QSSDQSITFEQS 123
Score = 35.5 bits (78), Expect = 0.54
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -2
Query: 377 TLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WDVTTCL 243
T S + L ++ +++TEWR EVNVL R Q+ ++ WDV L
Sbjct: 10 TTSSSSSLSGHSTWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLL 54
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 59.7 bits (138), Expect = 3e-08
Identities = 29/43 (67%), Positives = 31/43 (72%)
Frame = +3
Query: 255 NIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 383
NIPSFIVRL+S KHI FSL SP GG RVKRKN + GGG
Sbjct: 33 NIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGG 75
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 59.3 bits (137), Expect = 4e-08
Identities = 34/72 (47%), Positives = 43/72 (59%)
Frame = +1
Query: 46 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 225
E L L + G+L + LD VL L +ED LERRLQT VF+ GLA++ AR LI
Sbjct: 70 EAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVH 129
Query: 226 RHIRVRKQVVTS 261
HI V +VVT+
Sbjct: 130 GHIAVNGRVVTA 141
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 58.4 bits (135), Expect = 7e-08
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = +1
Query: 49 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 228
G + RL RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++ AR +
Sbjct: 67 GEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHG 125
Query: 229 HIRVRKQVVT 258
H+ V VT
Sbjct: 126 HVTVDGSRVT 135
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 56.0 bits (129), Expect = 4e-07
Identities = 32/70 (45%), Positives = 43/70 (61%)
Frame = +1
Query: 46 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 225
E L +L ++GVL E +LD VL L ++D LERRLQT + + GLAK++ AR I
Sbjct: 68 EKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVH 126
Query: 226 RHIRVRKQVV 255
HI V +VV
Sbjct: 127 GHIMVNGEVV 136
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 55.6 bits (128), Expect = 5e-07
Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = +3
Query: 261 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 386
PSF+VR+DS K D SL SP GGGRPGRVK+K+L+ K GGA
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLKVAAKEAAGGA 68
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 55.2 bits (127), Expect = 6e-07
Identities = 28/78 (35%), Positives = 47/78 (60%)
Frame = +1
Query: 25 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 204
+D + + ++++L +G+L E KL+ VL LK++D +ERRLQT +++ G A SI
Sbjct: 69 EDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQ 127
Query: 205 ARILIRQRHIRVRKQVVT 258
AR I HI + + +T
Sbjct: 128 ARQFIVHGHISLNGRKIT 145
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 54.8 bits (126), Expect = 8e-07
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +1
Query: 46 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 225
+ +L +L+R G++ + +D +L LK E+ LERRLQTQV + GLA+++ AR I
Sbjct: 78 QSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITH 136
Query: 226 RHIRVRKQVVT 258
HI + + T
Sbjct: 137 GHIAINGRKAT 147
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 1e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +1
Query: 91 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 198
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 52.8 bits (121), Expect = 3e-06
Identities = 32/67 (47%), Positives = 41/67 (61%)
Frame = +1
Query: 58 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 237
+++RL R +L +K LD VL L +E+ L+RRLQT VFK LA S AR LI HI
Sbjct: 76 MIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHIT 134
Query: 238 VRKQVVT 258
V + VT
Sbjct: 135 VNGRRVT 141
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 51.2 bits (117), Expect = 1e-05
Identities = 30/67 (44%), Positives = 40/67 (59%)
Frame = +1
Query: 58 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 237
L+ L R G+L E +D VL LK+E L+RRLQTQV++ G A+S AR I HI
Sbjct: 78 LIGSLQRSGMLSENA-DIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIA 136
Query: 238 VRKQVVT 258
+ + VT
Sbjct: 137 IGGRRVT 143
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 50.8 bits (116), Expect = 1e-05
Identities = 30/67 (44%), Positives = 41/67 (61%)
Frame = +1
Query: 58 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 237
++ R+V+ G+L E L+ VL + FLERRLQT VFK GLA++I AR LI I
Sbjct: 71 IIARMVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIA 129
Query: 238 VRKQVVT 258
V + V+
Sbjct: 130 VNMKRVS 136
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 50.0 bits (114), Expect = 2e-05
Identities = 28/64 (43%), Positives = 37/64 (57%)
Frame = +1
Query: 70 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 249
L R G+L ++ LD VL L +E LERRLQT VF+ GLA + AR I HI V +
Sbjct: 77 LNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGK 136
Query: 250 VVTS 261
+ +
Sbjct: 137 KINA 140
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 49.6 bits (113), Expect = 3e-05
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Frame = +1
Query: 1 RELLTLEEKDPKR-LFEG--NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQV 171
RELL L + +FE + L+ + R G+L +D VL LK+ LERRLQT V
Sbjct: 56 RELLALMSSATNQTVFEAKKSELISHMQRAGLLGP-DADIDNVLALKVPAQLERRLQTLV 114
Query: 172 FKAGLAKSIHHARILIRQRHIRVRKQVVT 258
++ GLA+S AR L+ HI + + VT
Sbjct: 115 YRKGLARSPKQARQLVTHGHIAIGGRRVT 143
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 49.6 bits (113), Expect = 3e-05
Identities = 27/68 (39%), Positives = 39/68 (57%)
Frame = +1
Query: 58 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 237
LL LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI
Sbjct: 73 LLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHIT 131
Query: 238 VRKQVVTS 261
+ + + +
Sbjct: 132 LNGKKINA 139
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 48.8 bits (111), Expect = 5e-05
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +1
Query: 109 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255
L+ ++ + + L RRLQT V + L+K+IH ARILI +HI+V+ Q+V
Sbjct: 95 LESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIV 143
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 47.2 bits (107), Expect = 2e-04
Identities = 34/86 (39%), Positives = 47/86 (54%)
Frame = +1
Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
R LL L ++ +R + LLR L RIG++ K LD VL L++ D L RRLQT V K
Sbjct: 56 RSLLALGQEVRER--KEPVLLRSLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKK 112
Query: 181 GLAKSIHHARILIRQRHIRVRKQVVT 258
+ + AR + HI + +VVT
Sbjct: 113 LGFSTPYQARQAVVHGHITISDRVVT 138
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 44.8 bits (101), Expect = 9e-04
Identities = 23/38 (60%), Positives = 25/38 (65%)
Frame = -2
Query: 254 TTCLRTRICLCRIKILA*WMDFARPALNTCVCRRRSKK 141
T CL TRI RIK A D ARP+L T VC+RRSKK
Sbjct: 81 TICLPTRIWRWRIKTRAWCTDLARPSLKTSVCKRRSKK 118
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 40.7 bits (91), Expect = 0.014
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +1
Query: 16 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 195
L+EK R F N ++ V K +G + LERRL +++AG S
Sbjct: 91 LKEKQKLRKFYANVTEKQFYNYYV---KAKSFKGKIGDNLIKMLERRLDIIIYRAGFVNS 147
Query: 196 IHHARILIRQRHIRVRKQV 252
I+ AR+L+ +H+ V ++
Sbjct: 148 IYQARLLVNHKHVLVNNKI 166
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 40.7 bits (91), Expect = 0.014
Identities = 27/86 (31%), Positives = 42/86 (48%)
Frame = +1
Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
R L L E+D R+ ALL +L +G++ + L+ + F RRL T + K
Sbjct: 60 RRLRDLPERDQFRVRASAALLDKLYALGLVPTRG-SLELCDFVTASSFCRRRLPTVLLKL 118
Query: 181 GLAKSIHHARILIRQRHIRVRKQVVT 258
+A+ + A + Q H+RV VVT
Sbjct: 119 RMAQHLQAAVAFVEQGHVRVGPDVVT 144
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 39.9 bits (89), Expect = 0.025
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = +3
Query: 273 VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 365
VR++ K IDFS GGGRPGRVKRK L+
Sbjct: 152 VRVEPQKLIDFSNTCLLGGGRPGRVKRKGLK 182
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 38.7 bits (86), Expect = 0.058
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +1
Query: 85 VLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 240
+ +E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V
Sbjct: 67 IYEEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAV 117
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 38.3 bits (85), Expect = 0.076
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 279 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 386
+DS KH DFSL SP G R +VKRK L+ K GGA
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLKVAAKKAAGGA 39
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 38.3 bits (85), Expect = 0.076
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 4 ELLT-LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
ELLT L + + R+ L R L +GV+D Q LD + L L RRL + K
Sbjct: 58 ELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQASLDDISKLNSSALLLRRLPCIMMKL 117
Query: 181 GLAKSIHHARILIRQRHIRVRKQVVTS 261
+ + I ++Q H+RV VV +
Sbjct: 118 KMVQKIQDGVRFVKQGHVRVGPNVVVN 144
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 37.9 bits (84), Expect = 0.10
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = +1
Query: 16 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 195
L+ KDP R + +L++L +G++ KQ L + F RRL + K +A++
Sbjct: 20 LDSKDPFRNQCTSQMLKKLYNMGIVPTKQ-NLALCDNVSASSFCRRRLPVVMVKIKMAET 78
Query: 196 IHHARILIRQRHIRVRKQVV 255
+ A ++ HIRV ++V
Sbjct: 79 VESAVKFVQHGHIRVGPELV 98
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 37.5 bits (83), Expect = 0.13
Identities = 28/82 (34%), Positives = 42/82 (51%)
Frame = +1
Query: 10 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 189
+ L+EK R G L R +R +L+ + K G + LERRL VF+AG A
Sbjct: 51 IKLQEKQKLRFNYG--LSERQLRHLMLNAR--KSTEPTGETLLQLLERRLDNVVFRAGFA 106
Query: 190 KSIHHARILIRQRHIRVRKQVV 255
++ AR L+ RH+R+ + V
Sbjct: 107 PTVIAARQLVSHRHVRLNGKPV 128
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 37.1 bits (82), Expect = 0.18
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = +1
Query: 7 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 186
L L+E DP R L+ RL +GV+ K KL + + F ERRL + + +
Sbjct: 60 LARLKESDPVRTTITKKLVGRLYSVGVI--KNRKLVDCTKVTVSSFCERRLPMVMKRIRM 117
Query: 187 AKSIHHARILIRQRHIRVRKQVV 255
S A + H+R+ +VV
Sbjct: 118 VPSFKDATRFVEHGHVRLGSKVV 140
>UniRef50_Q4PI89 Cluster: Transcription elongation factor SPT6; n=2;
Eukaryota|Rep: Transcription elongation factor SPT6 -
Ustilago maydis (Smut fungus)
Length = 1723
Score = 37.1 bits (82), Expect = 0.18
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 153 SSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCNIPSFIVRLDSGKHIDFSLKSPFGGG 332
++ DA +Q+WP +V P+ PA + A CN +F + + + K+P+GGG
Sbjct: 1505 ANRDAAIQTWPVKVLPNAFKLGPADQLADVAALCN--AFKTQYTTQASMARGAKTPYGGG 1562
Query: 333 R 335
R
Sbjct: 1563 R 1563
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 36.3 bits (80), Expect = 0.31
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 118 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 240
V G + LERRL VF+AG A S AR ++R +HI +
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILI 128
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 35.9 bits (79), Expect = 0.41
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 118 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255
+ G + F+E RL V++ G+A + AR L+ RHI V Q+V
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIV 127
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 35.9 bits (79), Expect = 0.41
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = +1
Query: 4 ELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 183
++ ++ K P R LL +L +G++ K L+ + F RRL + +
Sbjct: 60 KIAEVDAKHPFRTEMSGLLLEKLYVLGLIPTK-WDLENASKISASSFCRRRLPVVLLRNK 118
Query: 184 LAKSIHHARILIRQRHIRVRKQVV 255
+++++ HA +I H+RV VV
Sbjct: 119 MSENLKHATQMIEHGHVRVGTDVV 142
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 35.5 bits (78), Expect = 0.54
Identities = 29/83 (34%), Positives = 41/83 (49%)
Frame = +1
Query: 10 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 189
+ LEEK RL G + R+++R K + GL + LE RL VF+ G+A
Sbjct: 49 IRLEEKQKVRLNYGVSE-RQMLRYM---RKARRSKGSTGLALLQMLEMRLDCIVFRLGMA 104
Query: 190 KSIHHARILIRQRHIRVRKQVVT 258
+I AR L+ HI V + VT
Sbjct: 105 PTIPAARQLVSHGHIEVNGRKVT 127
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 35.1 bits (77), Expect = 0.71
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +1
Query: 97 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255
K K+ G + FLE RL VF+ +A +I AR LI HIRV + V
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKV 144
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 34.7 bits (76), Expect = 0.94
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 238 HEYAFAGSKFWHDGWTSPGQL*TPASAD 155
H +FWH GW+SP Q TPA+A+
Sbjct: 95 HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 34.7 bits (76), Expect = 0.94
Identities = 24/84 (28%), Positives = 37/84 (44%)
Frame = +1
Query: 4 ELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 183
+L L DP R LL +L +GVL K D + + RRL + +
Sbjct: 60 KLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLK 119
Query: 184 LAKSIHHARILIRQRHIRVRKQVV 255
+A++I A I Q H+RV ++
Sbjct: 120 MAETIQDAVKFIEQGHVRVGPNLI 143
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 34.3 bits (75), Expect = 1.2
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 106 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIV 244
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 34.3 bits (75), Expect = 1.2
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 124 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVT 258
GL + LE RL V++AG A ++ AR L+ H++V + VT
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVT 126
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 33.9 bits (74), Expect = 1.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 124 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255
G + LE RL +F+ G+A +I AR L+ RHI + V
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAV 119
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 33.9 bits (74), Expect = 1.6
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 94 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 240
E+ + + G + + LE RL V +AG A++I AR L+ RHI V
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILV 124
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 33.5 bits (73), Expect = 2.2
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +1
Query: 10 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 189
L L EK + G +L + R KQM + + G + LE RL +F+ GLA
Sbjct: 28 LQLREKQKAKFIYG--VLEKPFRNYYAKAKQM--EGMTGENLMRILESRLDNVIFRMGLA 83
Query: 190 KSIHHARILIRQRHIRVR-KQV 252
++ AR ++ +H+ V KQV
Sbjct: 84 RTRKEARQIVDHKHVLVNGKQV 105
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 33.1 bits (72), Expect = 2.9
Identities = 23/83 (27%), Positives = 36/83 (43%)
Frame = +1
Query: 7 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 186
L L + D R+ + RL +GV+ + L + + DF RRL V +
Sbjct: 61 LQKLPKDDAFRMVLTKRICDRLYDLGVIILPEKGLHMIDVIHASDFCRRRLAIVVKAKKM 120
Query: 187 AKSIHHARILIRQRHIRVRKQVV 255
+ A LI+Q HI+V V+
Sbjct: 121 VTDVTQAETLIQQGHIKVGPDVI 143
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 33.1 bits (72), Expect = 2.9
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +1
Query: 88 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255
L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V
Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIV 90
>UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, whole
genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_25, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 1517
Score = 32.7 bits (71), Expect = 3.8
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +1
Query: 46 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL-QTQVFKAGL-AKSIHHARILI 219
+GN+ L+RIG+LDE+ + + + + +ED + +L ++ F A K+ RI +
Sbjct: 930 KGNSRQANLIRIGLLDEENIHSEIIKKVSLEDLAQHKLFSSKKFNAEQDQKTTAELRIEL 989
Query: 220 --RQRHIRVRKQVVTSH 264
Q H++ ++ +T H
Sbjct: 990 CQIQTHVKKLEKKLTQH 1006
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 32.3 bits (70), Expect = 5.0
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 124 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255
G + LE RL +F+ G+A +I AR L+ RHI V ++V
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMV 109
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 31.9 bits (69), Expect = 6.6
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +1
Query: 1 RELLTLEEKDPKRLF 45
RELLTL+EKDP+RLF
Sbjct: 16 RELLTLDEKDPRRLF 30
>UniRef50_Q584A6 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 426
Score = 31.9 bits (69), Expect = 6.6
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +1
Query: 4 ELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQM--KLDYVLGLKIEDFLERRLQTQVFK 177
E+L L E +P+++ E A L ++D QM K YV ++ +ERR T V
Sbjct: 37 EILRLAEGEPEKIMEEPANLT-----SIIDRLQMFVKATYVKDSLYKEAMERRKGT-VNN 90
Query: 178 AGLAK-SIHHARILIRQR 228
+G AK S+H A +IR R
Sbjct: 91 SGAAKMSMHRANDIIRWR 108
>UniRef50_Q4Q475 Cluster: Pumilio protein, putative; n=3;
Leishmania|Rep: Pumilio protein, putative - Leishmania
major
Length = 850
Score = 31.9 bits (69), Expect = 6.6
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +3
Query: 147 GASSADAGV-QSWPGEVHPSCQNFDPAKAYSCPQASCNIPSFIVRLDSGKHIDFSLKSPF 323
G+SS G P ++ DPA YS P C S + + + S
Sbjct: 288 GSSSNGLGAGHGNPYQLMEGMGEVDPAMLYSQPGTDCGFQSRGTGRGGNRRYNNN-NSAG 346
Query: 324 GGGRPGRVKRKNLRKGQGGG 383
GG GRV R N R G+G G
Sbjct: 347 GGVGGGRVGRNNYRGGRGAG 366
>UniRef50_A4EAB5 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 382
Score = 31.5 bits (68), Expect = 8.7
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +1
Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
R T+E KD + A + RLVRI D+K+ + G+++ L + ++
Sbjct: 183 RATFTVEGKDAFGMLRAEAGVHRLVRISPTDDKRRRQTTFAGVEVIPVLPDDIDIEISPD 242
Query: 181 GLAKSIHHA 207
+ ++HA
Sbjct: 243 DIRVDVYHA 251
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 31.5 bits (68), Expect = 8.7
Identities = 20/85 (23%), Positives = 40/85 (47%)
Frame = +1
Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
+E+ L ++DP + + L +L +GV+D KQ ++ + F RR + K
Sbjct: 60 KEISDLSDQDPVKQKLLSDLSEKLYNMGVIDLKQP--SELVKVNASSFCRRRAVVMLVKK 117
Query: 181 GLAKSIHHARILIRQRHIRVRKQVV 255
A+ + A L+ H+R+ + +
Sbjct: 118 KFAEHLTQAFGLLSHGHVRIGPETI 142
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 31.5 bits (68), Expect = 8.7
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = +1
Query: 16 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 195
L E DP R +L + G++ L+ + + F RRL + G+ +S
Sbjct: 64 LSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIGKVTGASFARRRLPVVMRNIGMCES 122
Query: 196 IHHARILIRQRHIRVRKQVVT 258
+ A L+ Q H+R+ ++VT
Sbjct: 123 VKTASDLVEQGHVRIGTKLVT 143
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 31.5 bits (68), Expect = 8.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 124 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 240
G+ LERRL V++ GLA + AR L+ HI V
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILV 122
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 429,960,181
Number of Sequences: 1657284
Number of extensions: 8939028
Number of successful extensions: 27390
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 26583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27379
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -