BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS00633 (453 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 162 4e-39 UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 104 8e-22 UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 102 3e-21 UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 77 1e-13 UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 68 8e-11 UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 66 3e-10 UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 66 3e-10 UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 60 2e-08 UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 60 3e-08 UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 59 4e-08 UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 58 7e-08 UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 56 4e-07 UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 56 5e-07 UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 55 6e-07 UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 55 8e-07 UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 1e-06 UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 53 3e-06 UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 51 1e-05 UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 51 1e-05 UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 50 2e-05 UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 50 3e-05 UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 50 3e-05 UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 49 5e-05 UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 47 2e-04 UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 45 9e-04 UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 41 0.014 UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 41 0.014 UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 40 0.025 UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 39 0.058 UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.076 UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 38 0.076 UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 38 0.10 UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 38 0.13 UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 37 0.18 UniRef50_Q4PI89 Cluster: Transcription elongation factor SPT6; n... 37 0.18 UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 36 0.31 UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 36 0.41 UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.41 UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 36 0.54 UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 35 0.71 UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 35 0.94 UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 35 0.94 UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 34 1.2 UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 34 1.2 UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 34 1.6 UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 34 1.6 UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 33 2.2 UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 33 2.9 UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 33 2.9 UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, wh... 33 3.8 UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 32 5.0 UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 32 6.6 UniRef50_Q584A6 Cluster: Putative uncharacterized protein; n=1; ... 32 6.6 UniRef50_Q4Q475 Cluster: Pumilio protein, putative; n=3; Leishma... 32 6.6 UniRef50_A4EAB5 Cluster: Putative uncharacterized protein; n=1; ... 31 8.7 UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 31 8.7 UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 31 8.7 UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 31 8.7 >UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens (Human) Length = 194 Score = 162 bits (393), Expect = 4e-39 Identities = 78/85 (91%), Positives = 83/85 (97%) Frame = +1 Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180 RELLTL+EKDP+RLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK Sbjct: 58 RELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKL 117 Query: 181 GLAKSIHHARILIRQRHIRVRKQVV 255 GLAKSIHHAR+LIRQRHIRVRKQVV Sbjct: 118 GLAKSIHHARVLIRQRHIRVRKQVV 142 Score = 84.6 bits (200), Expect = 9e-16 Identities = 37/42 (88%), Positives = 40/42 (95%) Frame = +3 Query: 255 NIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 380 NIPSFIVRLDS KHIDFSL+SP+GGGRPGRVKRKN +KGQGG Sbjct: 143 NIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGG 184 >UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5; Oryza sativa|Rep: 40S ribosomal protein S9, putative - Oryza sativa subsp. japonica (Rice) Length = 157 Score = 104 bits (250), Expect = 8e-22 Identities = 50/78 (64%), Positives = 61/78 (78%) Frame = +1 Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180 +ELLTL+EK+P+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK Sbjct: 48 QELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKN 107 Query: 181 GLAKSIHHARILIRQRHI 234 G KSIHH +LIRQ HI Sbjct: 108 GTVKSIHHDHVLIRQHHI 125 >UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba histolytica|Rep: 40S ribosomal protein S9 - Entamoeba histolytica Length = 185 Score = 102 bits (245), Expect = 3e-21 Identities = 51/83 (61%), Positives = 63/83 (75%) Frame = +1 Query: 7 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 186 +L + KDPKRL EG ALLRRL +G+L Q KL++VL LK E+ LERRLQT V++ G Sbjct: 59 MLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGF 118 Query: 187 AKSIHHARILIRQRHIRVRKQVV 255 AKSIHHAR+LIR + I+V KQVV Sbjct: 119 AKSIHHARVLIRGKMIKVGKQVV 141 >UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1; Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry - Rattus norvegicus Length = 199 Score = 77.4 bits (182), Expect = 1e-13 Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 6/89 (6%) Frame = +1 Query: 7 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMK------LDYVLGLKIEDFLERRLQTQ 168 LL L EKDP+ LFE N LLR+LV G+L E +MK + GL+I F E++LQTQ Sbjct: 60 LLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQ 118 Query: 169 VFKAGLAKSIHHARILIRQRHIRVRKQVV 255 VF+ L KSI HA +L+ HIR+ KQVV Sbjct: 119 VFELVLDKSIRHACVLLCHCHIRIGKQVV 147 Score = 50.0 bits (114), Expect = 2e-05 Identities = 24/42 (57%), Positives = 28/42 (66%) Frame = +3 Query: 255 NIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 380 +I F V LDS KH DF GGG PG VKRKN++KG+GG Sbjct: 148 DIAFFFVGLDSRKHTDFFRHCLNGGGYPGSVKRKNVKKGRGG 189 >UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 - Encephalitozoon cuniculi Length = 184 Score = 68.1 bits (159), Expect = 8e-11 Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 9/94 (9%) Frame = +1 Query: 1 RELLTLEEKDPKRL-FEGNALLRRLVRIGVL------DEKQMK--LDYVLGLKIEDFLER 153 R + L +P+ + G +LLRRL++ G+L D++++ L+ VL L I +LER Sbjct: 53 RARILLTSTNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLER 112 Query: 154 RLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255 RLQ +VF AGLAKS+HHAR+LI R I ++ Q+V Sbjct: 113 RLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIV 146 >UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolobaceae|Rep: 30S ribosomal protein S4P - Sulfolobus tokodaii Length = 177 Score = 66.1 bits (154), Expect = 3e-10 Identities = 37/87 (42%), Positives = 55/87 (63%) Frame = +1 Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180 R LL L + R L+++L R+G++++ LD +LGL E++LERRLQT V+K Sbjct: 56 RSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKK 113 Query: 181 GLAKSIHHARILIRQRHIRVRKQVVTS 261 GLA++I+ AR LI HI + + VTS Sbjct: 114 GLARTIYQARQLIVHGHIAIGGRRVTS 140 >UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermoproteaceae|Rep: 30S ribosomal protein S4P - Pyrobaculum aerophilum Length = 159 Score = 66.1 bits (154), Expect = 3e-10 Identities = 35/84 (41%), Positives = 52/84 (61%) Frame = +1 Query: 10 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 189 +T EE+ P + +L ++G +++ ++LD +L L + LERRLQT V++ GLA Sbjct: 63 MTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLA 118 Query: 190 KSIHHARILIRQRHIRVRKQVVTS 261 KSIHHAR LI H+ V + VTS Sbjct: 119 KSIHHARQLIVHGHVAVAGRRVTS 142 >UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep: Similarity - Kluyveromyces lactis (Yeast) (Candida sphaerica) Length = 246 Score = 60.1 bits (139), Expect = 2e-08 Identities = 30/72 (41%), Positives = 50/72 (69%) Frame = -1 Query: 252 NLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTN 73 +LL ++N+ L DQ+S +++ L Q L LQ++ QE+ NLQ++ II+ L F Q +N++ Sbjct: 52 DLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQEIFNLQSQDIIQLLLVFRQDTNSH 111 Query: 72 QTT*KGITFEQS 37 Q++ + ITFEQS Sbjct: 112 QSSDQSITFEQS 123 Score = 35.5 bits (78), Expect = 0.54 Identities = 18/45 (40%), Positives = 27/45 (60%) Frame = -2 Query: 377 TLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WDVTTCL 243 T S + L ++ +++TEWR EVNVL R Q+ ++ WDV L Sbjct: 10 TTSSSSSLSGHSTWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLL 54 >UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa (japonica cultivar-group)|Rep: Os07g0628300 protein - Oryza sativa subsp. japonica (Rice) Length = 94 Score = 59.7 bits (138), Expect = 3e-08 Identities = 29/43 (67%), Positives = 31/43 (72%) Frame = +3 Query: 255 NIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 383 NIPSFIVRL+S KHI FSL SP GG RVKRKN + GGG Sbjct: 33 NIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGG 75 >UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archaea|Rep: 30S ribosomal protein S4P - Methanococcus jannaschii Length = 187 Score = 59.3 bits (137), Expect = 4e-08 Identities = 34/72 (47%), Positives = 43/72 (59%) Frame = +1 Query: 46 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 225 E L L + G+L + LD VL L +ED LERRLQT VF+ GLA++ AR LI Sbjct: 70 EAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVH 129 Query: 226 RHIRVRKQVVTS 261 HI V +VVT+ Sbjct: 130 GHIAVNGRVVTA 141 >UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobacteriaceae|Rep: 30S ribosomal protein S4P - Halobacterium salinarium (Halobacterium halobium) Length = 170 Score = 58.4 bits (135), Expect = 7e-08 Identities = 31/70 (44%), Positives = 44/70 (62%) Frame = +1 Query: 49 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 228 G + RL RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++ AR + Sbjct: 67 GEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHG 125 Query: 229 HIRVRKQVVT 258 H+ V VT Sbjct: 126 HVTVDGSRVT 135 >UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum equitans Length = 180 Score = 56.0 bits (129), Expect = 4e-07 Identities = 32/70 (45%), Positives = 43/70 (61%) Frame = +1 Query: 46 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 225 E L +L ++GVL E +LD VL L ++D LERRLQT + + GLAK++ AR I Sbjct: 68 EKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVH 126 Query: 226 RHIRVRKQVV 255 HI V +VV Sbjct: 127 GHIMVNGEVV 136 >UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; Vitis vinifera|Rep: Putative uncharacterized protein - Vitis vinifera (Grape) Length = 103 Score = 55.6 bits (128), Expect = 5e-07 Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 3/45 (6%) Frame = +3 Query: 261 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 386 PSF+VR+DS K D SL SP GGGRPGRVK+K+L+ K GGA Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLKVAAKEAAGGA 68 >UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured methanogenic archaeon RC-I|Rep: 30S ribosomal protein S4P - Uncultured methanogenic archaeon RC-I Length = 205 Score = 55.2 bits (127), Expect = 6e-07 Identities = 28/78 (35%), Positives = 47/78 (60%) Frame = +1 Query: 25 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 204 +D + + ++++L +G+L E KL+ VL LK++D +ERRLQT +++ G A SI Sbjct: 69 EDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQ 127 Query: 205 ARILIRQRHIRVRKQVVT 258 AR I HI + + +T Sbjct: 128 ARQFIVHGHISLNGRKIT 145 >UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarchaeota|Rep: 30S ribosomal protein S4P - Methanosarcina mazei (Methanosarcina frisia) Length = 219 Score = 54.8 bits (126), Expect = 8e-07 Identities = 27/71 (38%), Positives = 43/71 (60%) Frame = +1 Query: 46 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 225 + +L +L+R G++ + +D +L LK E+ LERRLQTQV + GLA+++ AR I Sbjct: 78 QSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITH 136 Query: 226 RHIRVRKQVVT 258 HI + + T Sbjct: 137 GHIAINGRKAT 147 >UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabidopsis thaliana|Rep: Putative ribosomal protein - Arabidopsis thaliana (Mouse-ear cress) Length = 106 Score = 54.4 bits (125), Expect = 1e-06 Identities = 25/36 (69%), Positives = 31/36 (86%) Frame = +1 Query: 91 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 198 D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52 >UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma volcanium Length = 200 Score = 52.8 bits (121), Expect = 3e-06 Identities = 32/67 (47%), Positives = 41/67 (61%) Frame = +1 Query: 58 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 237 +++RL R +L +K LD VL L +E+ L+RRLQT VFK LA S AR LI HI Sbjct: 76 MIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHIT 134 Query: 238 VRKQVVT 258 V + VT Sbjct: 135 VNGRRVT 141 >UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methanomicrobiales|Rep: 30S ribosomal protein S4P - Methanospirillum hungatei (strain JF-1 / DSM 864) Length = 181 Score = 51.2 bits (117), Expect = 1e-05 Identities = 30/67 (44%), Positives = 40/67 (59%) Frame = +1 Query: 58 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 237 L+ L R G+L E +D VL LK+E L+RRLQTQV++ G A+S AR I HI Sbjct: 78 LIGSLQRSGMLSENA-DIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIA 136 Query: 238 VRKQVVT 258 + + VT Sbjct: 137 IGGRRVT 143 >UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1; uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein small subunit S9 - uncultured euryarchaeote ARMAN-2 Length = 187 Score = 50.8 bits (116), Expect = 1e-05 Identities = 30/67 (44%), Positives = 41/67 (61%) Frame = +1 Query: 58 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 237 ++ R+V+ G+L E L+ VL + FLERRLQT VFK GLA++I AR LI I Sbjct: 71 IIARMVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIA 129 Query: 238 VRKQVVT 258 V + V+ Sbjct: 130 VNMKRVS 136 >UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus aeolicus Nankai-3|Rep: Ribosomal protein S4 - Methanococcus aeolicus Nankai-3 Length = 177 Score = 50.0 bits (114), Expect = 2e-05 Identities = 28/64 (43%), Positives = 37/64 (57%) Frame = +1 Query: 70 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 249 L R G+L ++ LD VL L +E LERRLQT VF+ GLA + AR I HI V + Sbjct: 77 LNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGK 136 Query: 250 VVTS 261 + + Sbjct: 137 KINA 140 >UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus Methanoregula boonei 6A8|Rep: Ribosomal protein S4 - Methanoregula boonei (strain 6A8) Length = 185 Score = 49.6 bits (113), Expect = 3e-05 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Frame = +1 Query: 1 RELLTLEEKDPKR-LFEG--NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQV 171 RELL L + +FE + L+ + R G+L +D VL LK+ LERRLQT V Sbjct: 56 RELLALMSSATNQTVFEAKKSELISHMQRAGLLGP-DADIDNVLALKVPAQLERRLQTLV 114 Query: 172 FKAGLAKSIHHARILIRQRHIRVRKQVVT 258 ++ GLA+S AR L+ HI + + VT Sbjct: 115 YRKGLARSPKQARQLVTHGHIAIGGRRVT 143 >UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methanobacteriaceae|Rep: 30S ribosomal protein S4P - Methanosphaera stadtmanae (strain DSM 3091) Length = 182 Score = 49.6 bits (113), Expect = 3e-05 Identities = 27/68 (39%), Positives = 39/68 (57%) Frame = +1 Query: 58 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 237 LL LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI Sbjct: 73 LLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHIT 131 Query: 238 VRKQVVTS 261 + + + + Sbjct: 132 LNGKKINA 139 >UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella natans|Rep: Ribosomal protein S9 - Bigelowiella natans (Pedinomonas minutissima) (Chlorarachnion sp.(strain CCMP 621)) Length = 180 Score = 48.8 bits (111), Expect = 5e-05 Identities = 22/49 (44%), Positives = 34/49 (69%) Frame = +1 Query: 109 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255 L+ ++ + + L RRLQT V + L+K+IH ARILI +HI+V+ Q+V Sbjct: 95 LESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIV 143 >UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermoprotei|Rep: 30S ribosomal protein S4P - Cenarchaeum symbiosum Length = 205 Score = 47.2 bits (107), Expect = 2e-04 Identities = 34/86 (39%), Positives = 47/86 (54%) Frame = +1 Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180 R LL L ++ +R + LLR L RIG++ K LD VL L++ D L RRLQT V K Sbjct: 56 RSLLALGQEVRER--KEPVLLRSLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKK 112 Query: 181 GLAKSIHHARILIRQRHIRVRKQVVT 258 + + AR + HI + +VVT Sbjct: 113 LGFSTPYQARQAVVHGHITISDRVVT 138 >UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1; Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA sequence - Ostreococcus tauri Length = 293 Score = 44.8 bits (101), Expect = 9e-04 Identities = 23/38 (60%), Positives = 25/38 (65%) Frame = -2 Query: 254 TTCLRTRICLCRIKILA*WMDFARPALNTCVCRRRSKK 141 T CL TRI RIK A D ARP+L T VC+RRSKK Sbjct: 81 TICLPTRIWRWRIKTRAWCTDLARPSLKTSVCKRRSKK 118 >UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1; Reclinomonas americana|Rep: Mitochondrial ribosomal protein S4 - Reclinomonas americana Length = 249 Score = 40.7 bits (91), Expect = 0.014 Identities = 23/79 (29%), Positives = 38/79 (48%) Frame = +1 Query: 16 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 195 L+EK R F N ++ V K +G + LERRL +++AG S Sbjct: 91 LKEKQKLRKFYANVTEKQFYNYYV---KAKSFKGKIGDNLIKMLERRLDIIIYRAGFVNS 147 Query: 196 IHHARILIRQRHIRVRKQV 252 I+ AR+L+ +H+ V ++ Sbjct: 148 IYQARLLVNHKHVLVNNKI 166 >UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar ribonucleoprotein protein IMP3 - Homo sapiens (Human) Length = 184 Score = 40.7 bits (91), Expect = 0.014 Identities = 27/86 (31%), Positives = 42/86 (48%) Frame = +1 Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180 R L L E+D R+ ALL +L +G++ + L+ + F RRL T + K Sbjct: 60 RRLRDLPERDQFRVRASAALLDKLYALGLVPTRG-SLELCDFVTASSFCRRRLPTVLLKL 118 Query: 181 GLAKSIHHARILIRQRHIRVRKQVVT 258 +A+ + A + Q H+RV VVT Sbjct: 119 RMAQHLQAAVAFVEQGHVRVGPDVVT 144 >UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_165, whole genome shotgun sequence - Vitis vinifera (Grape) Length = 203 Score = 39.9 bits (89), Expect = 0.025 Identities = 19/31 (61%), Positives = 22/31 (70%) Frame = +3 Query: 273 VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 365 VR++ K IDFS GGGRPGRVKRK L+ Sbjct: 152 VRVEPQKLIDFSNTCLLGGGRPGRVKRKGLK 182 >UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium nucleatum subsp. nucleatum Length = 195 Score = 38.7 bits (86), Expect = 0.058 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = +1 Query: 85 VLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 240 + +E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V Sbjct: 67 IYEEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAV 117 >UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; Vitis vinifera|Rep: Putative uncharacterized protein - Vitis vinifera (Grape) Length = 247 Score = 38.3 bits (85), Expect = 0.076 Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Frame = +3 Query: 279 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 386 +DS KH DFSL SP G R +VKRK L+ K GGA Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLKVAAKKAAGGA 39 >UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia ATCC 50803 Length = 184 Score = 38.3 bits (85), Expect = 0.076 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Frame = +1 Query: 4 ELLT-LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180 ELLT L + + R+ L R L +GV+D Q LD + L L RRL + K Sbjct: 58 ELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQASLDDISKLNSSALLLRRLPCIMMKL 117 Query: 181 GLAKSIHHARILIRQRHIRVRKQVVTS 261 + + I ++Q H+RV VV + Sbjct: 118 KMVQKIQDGVRFVKQGHVRVGPNVVVN 144 >UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 protein; n=2; Strongylocentrotus purpuratus|Rep: PREDICTED: similar to MGC69249 protein - Strongylocentrotus purpuratus Length = 145 Score = 37.9 bits (84), Expect = 0.10 Identities = 23/80 (28%), Positives = 41/80 (51%) Frame = +1 Query: 16 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 195 L+ KDP R + +L++L +G++ KQ L + F RRL + K +A++ Sbjct: 20 LDSKDPFRNQCTSQMLKKLYNMGIVPTKQ-NLALCDNVSASSFCRRRLPVVMVKIKMAET 78 Query: 196 IHHARILIRQRHIRVRKQVV 255 + A ++ HIRV ++V Sbjct: 79 VESAVKFVQHGHIRVGPELV 98 >UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betaproteobacteria|Rep: 30S ribosomal protein S4 B - Nitrosomonas europaea Length = 205 Score = 37.5 bits (83), Expect = 0.13 Identities = 28/82 (34%), Positives = 42/82 (51%) Frame = +1 Query: 10 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 189 + L+EK R G L R +R +L+ + K G + LERRL VF+AG A Sbjct: 51 IKLQEKQKLRFNYG--LSERQLRHLMLNAR--KSTEPTGETLLQLLERRLDNVVFRAGFA 106 Query: 190 KSIHHARILIRQRHIRVRKQVV 255 ++ AR L+ RH+R+ + V Sbjct: 107 PTVIAARQLVSHRHVRLNGKPV 128 >UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1; Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN - Encephalitozoon cuniculi Length = 180 Score = 37.1 bits (82), Expect = 0.18 Identities = 25/83 (30%), Positives = 38/83 (45%) Frame = +1 Query: 7 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 186 L L+E DP R L+ RL +GV+ K KL + + F ERRL + + + Sbjct: 60 LARLKESDPVRTTITKKLVGRLYSVGVI--KNRKLVDCTKVTVSSFCERRLPMVMKRIRM 117 Query: 187 AKSIHHARILIRQRHIRVRKQVV 255 S A + H+R+ +VV Sbjct: 118 VPSFKDATRFVEHGHVRLGSKVV 140 >UniRef50_Q4PI89 Cluster: Transcription elongation factor SPT6; n=2; Eukaryota|Rep: Transcription elongation factor SPT6 - Ustilago maydis (Smut fungus) Length = 1723 Score = 37.1 bits (82), Expect = 0.18 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = +3 Query: 153 SSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCNIPSFIVRLDSGKHIDFSLKSPFGGG 332 ++ DA +Q+WP +V P+ PA + A CN +F + + + K+P+GGG Sbjct: 1505 ANRDAAIQTWPVKVLPNAFKLGPADQLADVAALCN--AFKTQYTTQASMARGAKTPYGGG 1562 Query: 333 R 335 R Sbjct: 1563 R 1563 >UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea psychrophila Length = 210 Score = 36.3 bits (80), Expect = 0.31 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = +1 Query: 118 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 240 V G + LERRL VF+AG A S AR ++R +HI + Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILI 128 >UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1; Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1 Length = 134 Score = 35.9 bits (79), Expect = 0.41 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +1 Query: 118 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255 + G + F+E RL V++ G+A + AR L+ RHI V Q+V Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIV 127 >UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein protein IMP3 (U3 snoRNP protein IMP3), putative; n=3; Coelomata|Rep: U3 small nucleolar ribonucleoprotein protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes aegypti (Yellowfever mosquito) Length = 181 Score = 35.9 bits (79), Expect = 0.41 Identities = 21/84 (25%), Positives = 40/84 (47%) Frame = +1 Query: 4 ELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 183 ++ ++ K P R LL +L +G++ K L+ + F RRL + + Sbjct: 60 KIAEVDAKHPFRTEMSGLLLEKLYVLGLIPTK-WDLENASKISASSFCRRRLPVVLLRNK 118 Query: 184 LAKSIHHARILIRQRHIRVRKQVV 255 +++++ HA +I H+RV VV Sbjct: 119 MSENLKHATQMIEHGHVRVGTDVV 142 >UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular organisms|Rep: 30S ribosomal protein S4 - Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacteriumYellowstone A-Prime) Length = 203 Score = 35.5 bits (78), Expect = 0.54 Identities = 29/83 (34%), Positives = 41/83 (49%) Frame = +1 Query: 10 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 189 + LEEK RL G + R+++R K + GL + LE RL VF+ G+A Sbjct: 49 IRLEEKQKVRLNYGVSE-RQMLRYM---RKARRSKGSTGLALLQMLEMRLDCIVFRLGMA 104 Query: 190 KSIHHARILIRQRHIRVRKQVVT 258 +I AR L+ HI V + VT Sbjct: 105 PTIPAARQLVSHGHIEVNGRKVT 127 >UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2; Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4 - Chlamydomonas reinhardtii Length = 257 Score = 35.1 bits (77), Expect = 0.71 Identities = 21/53 (39%), Positives = 27/53 (50%) Frame = +1 Query: 97 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255 K K+ G + FLE RL VF+ +A +I AR LI HIRV + V Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKV 144 >UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C; n=1; Saccharomyces cerevisiae|Rep: Putative uncharacterized protein YKR033C - Saccharomyces cerevisiae (Baker's yeast) Length = 141 Score = 34.7 bits (76), Expect = 0.94 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 238 HEYAFAGSKFWHDGWTSPGQL*TPASAD 155 H +FWH GW+SP Q TPA+A+ Sbjct: 95 HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122 >UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar ribonucleoprotein protein IMP3 - Saccharomyces cerevisiae (Baker's yeast) Length = 183 Score = 34.7 bits (76), Expect = 0.94 Identities = 24/84 (28%), Positives = 37/84 (44%) Frame = +1 Query: 4 ELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 183 +L L DP R LL +L +GVL K D + + RRL + + Sbjct: 60 KLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLK 119 Query: 184 LAKSIHHARILIRQRHIRVRKQVV 255 +A++I A I Q H+RV ++ Sbjct: 120 MAETIQDAVKFIEQGHVRVGPNLI 143 >UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr14 scaffold_211, whole genome shotgun sequence - Vitis vinifera (Grape) Length = 276 Score = 34.3 bits (75), Expect = 1.2 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = +1 Query: 106 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255 K + +G + LE L +F+ G+A +I AR L+ RHI V ++V Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIV 244 >UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3; Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 - Cyanidium caldarium Length = 192 Score = 34.3 bits (75), Expect = 1.2 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +1 Query: 124 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVT 258 GL + LE RL V++AG A ++ AR L+ H++V + VT Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVT 126 >UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycularia crispula|Rep: Small ribosomal protein 4 - Calycularia crispula Length = 197 Score = 33.9 bits (74), Expect = 1.6 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +1 Query: 124 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255 G + LE RL +F+ G+A +I AR L+ RHI + V Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAV 119 >UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinobacteria (class)|Rep: 30S ribosomal protein S4 - Arthrobacter sp. (strain FB24) Length = 208 Score = 33.9 bits (74), Expect = 1.6 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +1 Query: 94 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 240 E+ + + G + + LE RL V +AG A++I AR L+ RHI V Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILV 124 >UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; Ruminococcus|Rep: Putative uncharacterized protein - Ruminococcus torques ATCC 27756 Length = 181 Score = 33.5 bits (73), Expect = 2.2 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +1 Query: 10 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 189 L L EK + G +L + R KQM + + G + LE RL +F+ GLA Sbjct: 28 LQLREKQKAKFIYG--VLEKPFRNYYAKAKQM--EGMTGENLMRILESRLDNVIFRMGLA 83 Query: 190 KSIHHARILIRQRHIRVR-KQV 252 ++ AR ++ +H+ V KQV Sbjct: 84 RTRKEARQIVDHKHVLVNGKQV 105 >UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleoprotein subunit; n=2; Entamoeba histolytica HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein subunit - Entamoeba histolytica HM-1:IMSS Length = 186 Score = 33.1 bits (72), Expect = 2.9 Identities = 23/83 (27%), Positives = 36/83 (43%) Frame = +1 Query: 7 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 186 L L + D R+ + RL +GV+ + L + + DF RRL V + Sbjct: 61 LQKLPKDDAFRMVLTKRICDRLYDLGVIILPEKGLHMIDVIHASDFCRRRLAIVVKAKKM 120 Query: 187 AKSIHHARILIRQRHIRVRKQVV 255 + A LI+Q HI+V V+ Sbjct: 121 VTDVTQAETLIQQGHIKVGPDVI 143 >UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6; Filicales|Rep: Ribosomal protein small subunit 4 - Asplenium trichomanes subsp. inexpectans Length = 169 Score = 33.1 bits (72), Expect = 2.9 Identities = 20/56 (35%), Positives = 27/56 (48%) Frame = +1 Query: 88 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255 L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIV 90 >UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, whole genome shotgun sequence; n=2; Paramecium tetraurelia|Rep: Chromosome undetermined scaffold_25, whole genome shotgun sequence - Paramecium tetraurelia Length = 1517 Score = 32.7 bits (71), Expect = 3.8 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Frame = +1 Query: 46 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL-QTQVFKAGL-AKSIHHARILI 219 +GN+ L+RIG+LDE+ + + + + +ED + +L ++ F A K+ RI + Sbjct: 930 KGNSRQANLIRIGLLDEENIHSEIIKKVSLEDLAQHKLFSSKKFNAEQDQKTTAELRIEL 989 Query: 220 --RQRHIRVRKQVVTSH 264 Q H++ ++ +T H Sbjct: 990 CQIQTHVKKLEKKLTQH 1006 >UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Coniferales|Rep: Small ribosomal protein 4 - Podocarpus latifolius Length = 222 Score = 32.3 bits (70), Expect = 5.0 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = +1 Query: 124 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 255 G + LE RL +F+ G+A +I AR L+ RHI V ++V Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMV 109 >UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus manatus latirostris Length = 30 Score = 31.9 bits (69), Expect = 6.6 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = +1 Query: 1 RELLTLEEKDPKRLF 45 RELLTL+EKDP+RLF Sbjct: 16 RELLTLDEKDPRRLF 30 >UniRef50_Q584A6 Cluster: Putative uncharacterized protein; n=1; Trypanosoma brucei|Rep: Putative uncharacterized protein - Trypanosoma brucei Length = 426 Score = 31.9 bits (69), Expect = 6.6 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Frame = +1 Query: 4 ELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQM--KLDYVLGLKIEDFLERRLQTQVFK 177 E+L L E +P+++ E A L ++D QM K YV ++ +ERR T V Sbjct: 37 EILRLAEGEPEKIMEEPANLT-----SIIDRLQMFVKATYVKDSLYKEAMERRKGT-VNN 90 Query: 178 AGLAK-SIHHARILIRQR 228 +G AK S+H A +IR R Sbjct: 91 SGAAKMSMHRANDIIRWR 108 >UniRef50_Q4Q475 Cluster: Pumilio protein, putative; n=3; Leishmania|Rep: Pumilio protein, putative - Leishmania major Length = 850 Score = 31.9 bits (69), Expect = 6.6 Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Frame = +3 Query: 147 GASSADAGV-QSWPGEVHPSCQNFDPAKAYSCPQASCNIPSFIVRLDSGKHIDFSLKSPF 323 G+SS G P ++ DPA YS P C S + + + S Sbjct: 288 GSSSNGLGAGHGNPYQLMEGMGEVDPAMLYSQPGTDCGFQSRGTGRGGNRRYNNN-NSAG 346 Query: 324 GGGRPGRVKRKNLRKGQGGG 383 GG GRV R N R G+G G Sbjct: 347 GGVGGGRVGRNNYRGGRGAG 366 >UniRef50_A4EAB5 Cluster: Putative uncharacterized protein; n=1; Collinsella aerofaciens ATCC 25986|Rep: Putative uncharacterized protein - Collinsella aerofaciens ATCC 25986 Length = 382 Score = 31.5 bits (68), Expect = 8.7 Identities = 17/69 (24%), Positives = 32/69 (46%) Frame = +1 Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180 R T+E KD + A + RLVRI D+K+ + G+++ L + ++ Sbjct: 183 RATFTVEGKDAFGMLRAEAGVHRLVRISPTDDKRRRQTTFAGVEVIPVLPDDIDIEISPD 242 Query: 181 GLAKSIHHA 207 + ++HA Sbjct: 243 DIRVDVYHA 251 >UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; Dictyostelium discoideum AX4|Rep: Putative uncharacterized protein - Dictyostelium discoideum AX4 Length = 177 Score = 31.5 bits (68), Expect = 8.7 Identities = 20/85 (23%), Positives = 40/85 (47%) Frame = +1 Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180 +E+ L ++DP + + L +L +GV+D KQ ++ + F RR + K Sbjct: 60 KEISDLSDQDPVKQKLLSDLSEKLYNMGVIDLKQP--SELVKVNASSFCRRRAVVMLVKK 117 Query: 181 GLAKSIHHARILIRQRHIRVRKQVV 255 A+ + A L+ H+R+ + + Sbjct: 118 KFAEHLTQAFGLLSHGHVRIGPETI 142 >UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like; n=4; Bilateria|Rep: Putative 40S ribosomal protein S4-like - Caenorhabditis elegans Length = 183 Score = 31.5 bits (68), Expect = 8.7 Identities = 21/81 (25%), Positives = 37/81 (45%) Frame = +1 Query: 16 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 195 L E DP R +L + G++ L+ + + F RRL + G+ +S Sbjct: 64 LSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIGKVTGASFARRRLPVVMRNIGMCES 122 Query: 196 IHHARILIRQRHIRVRKQVVT 258 + A L+ Q H+R+ ++VT Sbjct: 123 VKTASDLVEQGHVRIGTKLVT 143 >UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular organisms|Rep: 30S ribosomal protein S4 - Lactobacillus johnsonii Length = 203 Score = 31.5 bits (68), Expect = 8.7 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +1 Query: 124 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 240 G+ LERRL V++ GLA + AR L+ HI V Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILV 122 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 429,960,181 Number of Sequences: 1657284 Number of extensions: 8939028 Number of successful extensions: 27390 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 26583 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 27379 length of database: 575,637,011 effective HSP length: 94 effective length of database: 419,852,315 effective search space used: 23511729640 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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