Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00633
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 151 4e-38
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 151 5e-38
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 44 1e-05
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 30 0.14
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 1.8
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 26 2.3
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 5.4
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.2
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 24 9.5
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 9.5
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 151 bits (367), Expect = 4e-38
Identities = 71/85 (83%), Positives = 80/85 (94%)
Frame = +1
Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
RELLTL+EKDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK
Sbjct: 57 RELLTLDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKL 116
Query: 181 GLAKSIHHARILIRQRHIRVRKQVV 255
GLAKSIHHAR+LI QRHIRV KQ+V
Sbjct: 117 GLAKSIHHARVLIFQRHIRVGKQIV 141
Score = 73.3 bits (172), Expect = 2e-14
Identities = 31/43 (72%), Positives = 36/43 (83%)
Frame = +3
Query: 255 NIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 383
N+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR Q GG
Sbjct: 142 NVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGG 184
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 151 bits (366), Expect = 5e-38
Identities = 71/85 (83%), Positives = 80/85 (94%)
Frame = +1
Query: 1 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
RELLTL+EKDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK
Sbjct: 57 RELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKL 116
Query: 181 GLAKSIHHARILIRQRHIRVRKQVV 255
GLAKSIHHAR+LI QRHIRV KQ+V
Sbjct: 117 GLAKSIHHARVLIFQRHIRVGKQIV 141
Score = 72.9 bits (171), Expect = 2e-14
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +3
Query: 255 NIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 380
N+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR +GG
Sbjct: 142 NVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEGG 183
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/84 (32%), Positives = 39/84 (46%)
Frame = +1
Query: 7 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 186
L L+ DP RL N LL +L +G+L K D + RRL + K +
Sbjct: 61 LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120
Query: 187 AKSIHHARILIRQRHIRVRKQVVT 258
++ + A LI Q H+RV V+T
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVIT 144
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 30.3 bits (65), Expect = 0.14
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +3
Query: 132 D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCNIPSF 269
D GLLGA+S GVQS PG P P + P S + P +
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSPGY 1565
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 103 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 234
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 2.3
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 281 GLWQAH*LLSEISIRWRSSWTCQEEEPPQGTGWR 382
G + A +L ++S W+ +W +E++ WR
Sbjct: 383 GRYIAQRILGDLSEEWKDAWRWREDDKASELKWR 416
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 257 HPIIYCAPGLWQAH*LLSEISIRWRSSWTCQEEE 358
HP + GL Q H + ++ W SSW ++E
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSWKKNKQE 354
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 24.6 bits (51), Expect = 7.2
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +3
Query: 180 WPGEVHPSCQNFDPAKAYSCPQASCNIPSFIVR 278
W G+++P N DP + + S SF+++
Sbjct: 474 WSGQLYPDTVNLDPDMCMANVEVSIAKGSFVIQ 506
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 24.2 bits (50), Expect = 9.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 79 IGVLDEKQMKLDYVLGLKIEDFLERR 156
+G++ EK M+LD V G K+E ++RR
Sbjct: 101 MGLVGEK-MELDAVKGRKVESRVDRR 125
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 9.5
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -3
Query: 190 SPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSP 20
+P + TPA DA SPQS H +V PV PD+ + ++ PSP
Sbjct: 30 TPLAIHTPAKGFDADLSPQSLYDLH----TVTTPVTPLAPDEWDFSLDQSSGVIPSP 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,108
Number of Sequences: 5004
Number of extensions: 33950
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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