Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00633
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             159   8e-40
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.021
SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 28   4.2  
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)                  27   5.5  
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)                    27   7.3  
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  159 bits (387), Expect = 8e-40
 Identities = 77/85 (90%), Positives = 82/85 (96%)
 Frame = +1

Query: 1   RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
           RELLTLEEKDP+RLFEGNALLRRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK 
Sbjct: 55  RELLTLEEKDPRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKL 114

Query: 181 GLAKSIHHARILIRQRHIRVRKQVV 255
           GLAKSIHHAR+LIRQRHIRVRKQ+V
Sbjct: 115 GLAKSIHHARVLIRQRHIRVRKQLV 139



 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 35/42 (83%), Positives = 40/42 (95%)
 Frame = +3

Query: 255 NIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 380
           N+PSF+VRLDS KHIDFSL SP+GGGRPGRVKRKN++KGQGG
Sbjct: 140 NVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKKGQGG 181


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 35.5 bits (78), Expect = 0.021
 Identities = 22/80 (27%), Positives = 38/80 (47%)
 Frame = +1

Query: 16  LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 195
           L+ KDP R+     +L +L  +G++  K+  L     +    F  RRL   +    +A+ 
Sbjct: 64  LDPKDPYRVEATEQILEKLHNMGLISTKK-NLGQCNKVNASSFCRRRLPVVMVNLKMAQV 122

Query: 196 IHHARILIRQRHIRVRKQVV 255
           +  A   I Q H+RV  +V+
Sbjct: 123 VKDAVKYIEQGHVRVGPEVI 142


>SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +1

Query: 55  ALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 234
           AL +R  RI  +  + +KL     L  + FLERRL              +   LI   H 
Sbjct: 310 ALKKRNERIRRIARESLKLSQRFCLDCDVFLERRLVVHEIDISAKAYALNLTALIGASHD 369

Query: 235 RVRKQVVTSH 264
           R+ K ++  H
Sbjct: 370 RILKSLLVHH 379


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 70  LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 216
           L++I   D+K M+ +Y+LGL +E   +R    +++   + K   H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854


>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
          Length = 1405

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = +1

Query: 43   FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIR 222
            F G A+  +    G+L   +  LD ++G K ED+ +RRL+ ++ K   A++     ++  
Sbjct: 1139 FRGEAITFKATTAGILATLEHCLD-LMG-KREDYWQRRLEREIEKRKKAEASVKESVVSA 1196

Query: 223  QRH 231
            ++H
Sbjct: 1197 KKH 1199


>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
          Length = 499

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 142 SPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPS 23
           SP+ +D  H  VSSV    LQ   DD   H L+  ++ PS
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPS 257


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 303  FSLKSPFGGGRPGRVKRKNLRKGQGGGAPM 392
            F L  PF  G PGR+ ++N+ + + GG  +
Sbjct: 1096 FELLKPFIFGYPGRLGQRNVARVRAGGGAL 1125


>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 102 DETRLCAWSED*GLLGASSADAGVQSW 182
           D  + CAWS +   + +SSAD  V  W
Sbjct: 89  DRVKSCAWSPNGEYVASSSADGRVTLW 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,304,599
Number of Sequences: 59808
Number of extensions: 283471
Number of successful extensions: 624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)