Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00633
         (453 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   134   3e-32
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   132   8e-32
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    38   0.004
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   0.64 
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   2.6  
At1g43730.1 68414.m05028 hypothetical protein                          28   2.6  
At3g12970.1 68416.m01616 expressed protein                             28   3.4  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    27   4.5  
At5g28615.1 68418.m03493 hypothetical protein                          27   4.5  
At1g60720.1 68414.m06835 hypothetical protein                          27   5.9  
At1g56020.1 68414.m06431 expressed protein                             27   5.9  
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei...    27   7.8  
At1g02020.2 68414.m00122 nitroreductase family protein contains ...    27   7.8  
At1g02020.1 68414.m00121 nitroreductase family protein contains ...    27   7.8  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  134 bits (323), Expect = 3e-32
 Identities = 63/85 (74%), Positives = 76/85 (89%)
 Frame = +1

Query: 1   RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
           RELLTL+EK+P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+
Sbjct: 59  RELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKS 118

Query: 181 GLAKSIHHARILIRQRHIRVRKQVV 255
           G+AKSIHHAR+LIRQRHIRV +Q+V
Sbjct: 119 GMAKSIHHARVLIRQRHIRVGRQLV 143



 Score = 70.1 bits (164), Expect = 6e-13
 Identities = 30/39 (76%), Positives = 35/39 (89%)
 Frame = +3

Query: 255 NIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 371
           NIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R G
Sbjct: 144 NIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAG 182


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  132 bits (320), Expect = 8e-32
 Identities = 62/85 (72%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 180
           R+LLTL+EK P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+
Sbjct: 59  RDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKS 118

Query: 181 GLAKSIHHARILIRQRHIRVRKQVV 255
           G+AKSIHH+R+LIRQRHIRV KQ+V
Sbjct: 119 GMAKSIHHSRVLIRQRHIRVGKQLV 143



 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 34/47 (72%), Positives = 38/47 (80%), Gaps = 4/47 (8%)
 Frame = +3

Query: 255 NIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN----LRKGQGGG 383
           NIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N     +K  GGG
Sbjct: 144 NIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKASGGG 190


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 23/81 (28%), Positives = 38/81 (46%)
 Frame = +1

Query: 16  LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 195
           ++  DP R+   + LL +L  +GV+  ++  L     L +  F  RRL T +     A+ 
Sbjct: 63  MDPADPFRIQMTDMLLEKLYNMGVIPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEH 121

Query: 196 IHHARILIRQRHIRVRKQVVT 258
              A   I Q H+RV  + +T
Sbjct: 122 HKEAVTYIEQGHVRVGPETIT 142


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -2

Query: 332 TSTEWRFQREVNVLARVQAHN 270
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 99  TDETRLCAWSED*GLLGASSADAGVQSW 182
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 217 SKFWHDGWTSPGQL 176
           +KFWHD WT  G L
Sbjct: 77  AKFWHDNWTGHGPL 90


>At3g12970.1 68416.m01616 expressed protein
          Length = 381

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 22/85 (25%), Positives = 37/85 (43%)
 Frame = -1

Query: 357 SSS*HVQDDLHRMEISERSQCACQSPGAQ*MMGCYNLLADTNMPLPDQNSGMMDGLRQAS 178
           SSS H  DDL R+ +   ++    +P A+     ++ L + N P   +    +D   ++S
Sbjct: 201 SSSGHELDDLPRLSLDLDNKPGTPNPFARSRAHHHHHLRNQNQPRKPRRHTQVDESTESS 260

Query: 177 FEHLRLQTTLQEVLNLQTKHIIEFH 103
            E  R+ T   +   L     I FH
Sbjct: 261 IES-RVMTVTADSPRLNASGKIVFH 284


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 67  RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 168
           RL  + VLDE++  +D  LG+K     ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506


>At5g28615.1 68418.m03493 hypothetical protein
          Length = 149

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 217 SKFWHDGWTSPGQL 176
           +KFWHD WT  G L
Sbjct: 9   AKFWHDDWTGLGPL 22


>At1g60720.1 68414.m06835 hypothetical protein
          Length = 289

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 211 FWHDGWTSPGQL 176
           FWHD WTS G L
Sbjct: 25  FWHDSWTSLGPL 36


>At1g56020.1 68414.m06431 expressed protein
          Length = 398

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -3

Query: 247 ACGHEYAFAGSKFWHDGWTSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYE 74
           AC      +  KF   GWTSP       + DD  RS     Q  + +  +  PV+ +E
Sbjct: 4   ACVKSAGVSPEKFSSYGWTSPRM---SLTRDDNRRSSSVDKQQSDPLPEIQDPVVDFE 58


>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|Q27294 RNA-binding protein cabeza {Drosophila
           melanogaster}; contains Pfam profiles: PF00076 RNA
           recognition motif (aka RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 372

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/81 (23%), Positives = 29/81 (35%)
 Frame = +3

Query: 147 GASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCNIPSFIVRLDSGKHIDFSLKSPFG 326
           GA   + G     G+   S + +     + CP  SC   +F  R         +  +   
Sbjct: 111 GAEETNGGAGRGRGQADSSAKPWQQDGDWMCPNTSCTNVNFAFR-GVCNRCGTARPAGAS 169

Query: 327 GGRPGRVKRKNLRKGQGGGAP 389
           GG  G  + +    G  GGAP
Sbjct: 170 GGSMGAGRGRGRGGGADGGAP 190


>At1g02020.2 68414.m00122 nitroreductase family protein contains
           Pfam PF00881: nitroreductase family protein profile;
           contains Prosite PS00343: Gram-positive cocci surface
           proteins 'anchoring' hexapeptide
          Length = 543

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 168 GVQSWPGEVHPSCQNFDPAKAY 233
           G  +WP  V+PS  N  P +AY
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAY 185


>At1g02020.1 68414.m00121 nitroreductase family protein contains
           Pfam PF00881: nitroreductase family protein profile;
           contains Prosite PS00343: Gram-positive cocci surface
           proteins 'anchoring' hexapeptide
          Length = 642

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 168 GVQSWPGEVHPSCQNFDPAKAY 233
           G  +WP  V+PS  N  P +AY
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAY 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,287,444
Number of Sequences: 28952
Number of extensions: 198160
Number of successful extensions: 605
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)