Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00632
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa... 28 1.0
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 28 1.0
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.0
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 7.2
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 7.2
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 9.5
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 9.5
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 9.5
>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 558 IARPPHFVAGVVREAQRKMTATNSMAAITMATEPIA 451
+A P HF ++ E + T++ S+AA + +PIA
Sbjct: 226 VAVPTHFFKVIIAEKSGEPTSSPSVAAFVLPNKPIA 261
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = -3
Query: 232 TTPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPKNAMMKAMPPTIIQATGA 53
TTP T TITP V + I T M A +T M+ + + A T ++ T
Sbjct: 108 TTPMVETTTITPMVETTTI-TPMVEAMITLMEETMTTPMEETTTILPMAAMTTPMEETTT 166
Query: 52 TLKLVSDSTV 23
T +V +T+
Sbjct: 167 TTPMVETTTI 176
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -2
Query: 287 GTYLGLAGRSCHPVR---DSSNYSVEIHKHHYAQGQFQCHQHQHE 162
G + +G+ HP D+ + ++E +Y +G+F CH HE
Sbjct: 268 GRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHE 312
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -3
Query: 241 IAAT-TPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPK-NAMMKAMPPTII 68
+A T TP+ + SFS+ +T VTS + S++ P N+ +PPT
Sbjct: 30 VATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTS 89
Query: 67 QATGATL 47
T T+
Sbjct: 90 MNTTTTV 96
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 384 QGVVEQHVLGRVKDRYEPGPVGPQQLN 304
Q VV++ V VK+ P P PQ LN
Sbjct: 1165 QNVVDESVTRVVKELPVPAPAAPQTLN 1191
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 7.2
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Frame = -3
Query: 232 TTPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPKNAMM-------KAMPPT 74
+ P+ TN + K + N S ++ TS+ LS AP+ PK A + K P
Sbjct: 86 SNPTSKTNNVRAKAR-NIRNPSQRLRPSTSLARLSNNAPRIPKEASLHENSISSKESPSV 144
Query: 73 IIQATGATLKLVSDSTVS-MSANCK 2
AT+ S S+++ MS+N +
Sbjct: 145 TTSKHVATITKPSTSSIARMSSNAR 169
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 254 HPVRDSSNYSVEIHKHHYAQGQFQ 183
HP +DS Y+ +H +A +FQ
Sbjct: 511 HPNKDSEVYTKNLHNKRFASVRFQ 534
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = +2
Query: 176 DGTETDLGRNGVCESRRSSCCY 241
DG L + +C+ ++ +CCY
Sbjct: 342 DGKTCKLTKGSLCDDQQDACCY 363
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 146 CHLRDLHAGVDGTETDLGRNGV 211
C LRD DG +T++G G+
Sbjct: 683 CLLRDFEILADGDQTEVGEKGI 704
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,600
Number of Sequences: 5004
Number of extensions: 40048
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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