Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00632
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129... 32 0.46
04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844... 32 0.46
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 31 0.60
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 31 1.1
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 30 1.4
08_02_0707 - 20212190-20214592 30 1.8
08_01_0681 - 5969645-5969950 30 1.8
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334 29 2.4
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 3.2
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658... 29 3.2
05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365... 29 4.2
05_01_0214 - 1615519-1616775 29 4.2
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 4.2
10_06_0062 - 10233885-10234082,10235868-10236004,10236103-10236424 28 5.6
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 7.4
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 28 7.4
09_04_0386 + 17190016-17190170,17190234-17190318 27 9.8
05_02_0120 - 6797954-6798970,6799466-6799951 27 9.8
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 27 9.8
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 27 9.8
>07_01_0183 +
1297445-1297796,1297896-1298424,1298548-1298630,
1298901-1298989,1299091-1299164,1300196-1300246,
1300439-1300515,1302199-1302863
Length = 639
Score = 31.9 bits (69), Expect = 0.46
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -2
Query: 275 GLAGRSCHPVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAAS 108
G G S P SS H HH+ Q Q Q Q QH + +H + P T A+
Sbjct: 17 GWLGFSLSPHMASSTMDEHHHVHHHQQQQQQQQQQQHHQQ--QQHGLFFPSVTTAA 70
>04_04_0020 +
22182649-22182829,22183900-22183999,22184415-22184491,
22184718-22184809,22188655-22189767
Length = 520
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 215 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEECNDESD 84
H+HH + H HE+ + A A DG +S+E +DE +
Sbjct: 474 HRHHPQPPPSRPHYQYHENNIAVAAAAAASDGEQSSDEEDDEEE 517
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 248 VRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVG 150
V SS+ S+E H +HY G H HQ D VG
Sbjct: 117 VGSSSSDSLEHHSNHYCNGGHHHHGHQCYDSVG 149
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 535 CGRGSR-GTEEDDGHQFNGGDHDGDRA-DSNAIVIEECLQD 419
C R +R G E D GH+ +GGD +G+ D A V + L+D
Sbjct: 231 CHRDARLGGELDGGHRDDGGDGEGEGVDDGGAAVADVVLED 271
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = -2
Query: 275 GLAGRSCHPVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEECN 96
G + S H R+ S+ + H+H A Q + + R G + DG++AS +
Sbjct: 241 GYSSPSIHHSRNVSSENPPSHRHPNATSQIDFNGVRRSQRTGSSGSFGSFDGSSASNKSV 300
Query: 95 DESDAPNNHT 66
D P+ T
Sbjct: 301 DSGALPDAPT 310
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 215 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNHTGH 60
H H ++ H H HED HA+ + A E + +++ ++H H
Sbjct: 504 HSHSHSHSHSHSHVHGHEDHHNHDHALQGVNHNGACCEHHGDANKSHHHDHH 555
>08_01_0681 - 5969645-5969950
Length = 101
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -3
Query: 532 GRGSRGTEEDDG--HQFNGGDHDGD 464
GRGS G +DDG +GGD DGD
Sbjct: 51 GRGSGGGRDDDGGDRDDDGGDRDGD 75
>10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334
Length = 664
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 134 QLHACHLRDL-HAGVDGTETDLGRNGVCESRRSSCCYP 244
+L+AC L AG + T GR G +S CCYP
Sbjct: 147 RLYACEDSSLCRAGCEDVAT-CGRGGAAAGAKSGCCYP 183
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 182 CHQHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNHTGHRRYSE 45
C + H+D +K + PDG AAS N+ D ++H G ++E
Sbjct: 1930 CLDYPHDDHNSEKEDIHQPDGYAASPGNNNHFD--SSHEGGYLHAE 1973
>02_04_0454 +
23064081-23064139,23064297-23064366,23064553-23065815,
23065946-23066515
Length = 653
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 161 DRVGDKHAVALPDGTAASEECNDESDAPNNHTGHRRYSEA 42
D +HA A P A + +D+ D+P GHRR A
Sbjct: 350 DEFALRHAAAPPPPVALAVSPDDDDDSPARSGGHRRSRSA 389
>05_06_0126 -
25834129-25834214,25834595-25834658,25836201-25836521,
25836912-25837040,25837118-25837177,25837251-25837548,
25837622-25837776,25837959-25838097,25838185-25838266,
25838337-25838455,25838537-25838664,25838810-25838983,
25839052-25839203,25839393-25839425,25840362-25841331,
25841412-25841537
Length = 1011
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 185 QCHQHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNHTGHRR 54
+C H + GD+H +A D T S CN + N RR
Sbjct: 186 ECLDHYNALHPGDEHDLAPGDVTLCSAPCNSTTWTHGNFVARRR 229
>05_01_0214 - 1615519-1616775
Length = 418
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 215 HKHHYAQGQFQCHQHQHEDRVGDKHAVAL 129
H HH+ + Q H H HED G+ V L
Sbjct: 207 HDHHHHEDQEHGHVHHHEDGHGNSITVNL 235
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 215 HKHHYAQGQFQCHQHQHEDRVGDK 144
H+HH+ Q Q H HQ + R G +
Sbjct: 139 HRHHHHQRQRHHHHHQRQQRRGSR 162
>10_06_0062 - 10233885-10234082,10235868-10236004,10236103-10236424
Length = 218
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -1
Query: 561 LIARPPHFVAGVVREAQRKMTATNSMAAITMATEPIATP*LLKSACRTSVQPAYALITVQ 382
+ A P H+VA VVR AT + A+ A + LL+ + Y L+T +
Sbjct: 51 MAANPGHYVAEVVRPVATAPAATAATASAPAARRRLK---LLRPDDTLVLGGVYRLVTFE 107
Query: 381 GVVEQHVLGR 352
V++Q V R
Sbjct: 108 DVLKQFVSKR 117
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -2
Query: 215 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASE 105
H HH++Q Q H H G + ++P A+E
Sbjct: 156 HPHHHSQPQQPQSHHHHHHHSGSRKRHSMPPAYTAAE 192
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 532 GRGSRGTEEDDGHQFNGGDHDGDRADSNAIVIEEC 428
G G+ G+ G F GG GD A + +E C
Sbjct: 78 GAGAAGSRAPSGFVFGGGGGGGDTAAPGLVDVEGC 112
>09_04_0386 + 17190016-17190170,17190234-17190318
Length = 79
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 212 KHHYAQGQFQCHQHQ 168
+HH QGQ CH+HQ
Sbjct: 12 QHHAEQGQSPCHRHQ 26
>05_02_0120 - 6797954-6798970,6799466-6799951
Length = 500
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -2
Query: 377 SSSSTYWAGSRIGTSPDPL 321
SSS++ WAG+R+ T+PD L
Sbjct: 305 SSSTSTWAGARLLTNPDHL 323
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 484 GGDHDGDRADSNAIVIEECL 425
GG +DG+ AD+ A V+E+ L
Sbjct: 16 GGGYDGEEADAGAAVVEKAL 35
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = -2
Query: 263 RSCHPVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPD 123
R D + V+ H HH+ H H H G A A PD
Sbjct: 551 RGADDAADDAGGDVDHHHHHHGH-----HHHGHHHHEGSSAAAAAPD 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,312,483
Number of Sequences: 37544
Number of extensions: 307694
Number of successful extensions: 1138
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -