Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00632
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.087
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            33   0.27 
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.62 
SB_46879| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_23199| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)                 29   4.3  
SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016)                 28   5.7  
SB_58920| Best HMM Match : GRP (HMM E-Value=0.35)                      28   7.6  
SB_33162| Best HMM Match : EGF (HMM E-Value=1.2e-06)                   28   7.6  
SB_26373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_22690| Best HMM Match : Collagen (HMM E-Value=0.042)                28   7.6  
SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)                   28   7.6  
SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013)                   28   7.6  
SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9)                      28   7.6  

>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 126 RESNCMLVTYAIFMLVLMALKLTLGVMVFVNLDGVVAAI 242
           RE+ C+L  +++ + ++  L+L LGV VFV  D V A I
Sbjct: 70  RENICLLKFFSVVLAIIFFLQLALGVFVFVFQDKVEAVI 108


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +3

Query: 126 RESNCMLVTYAIFMLVLMALKLTLGVMVFVNLDGV 230
           +E+ CML+ + I +L+++ L++   V+ ++N D +
Sbjct: 430 KENKCMLILFFILLLIVLGLEIAAAVLGYINKDKI 464


>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 126 RESNCMLVTYAIFMLVLMALKLTLGVMVFVNLDGV 230
           +E+ CML+ +  F+L+L+ L++  G + + N D +
Sbjct: 77  KENKCMLICFFAFLLLLLILEIVGGALAYNNKDKI 111


>SB_46879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -1

Query: 525 VREAQRKMTATNSMAAITMATEPIATP*LLKSACRTSVQPAYALITVQGVVEQHVLGRVK 346
           +R  +R  +     AA+    + I+T  LL  A    VQ  +  + V  + E+H L RVK
Sbjct: 57  IRSYERTKSPGEKEAAMESLNQAISTLALLDVAGAGVVQNPFTSLIVNSIAERHELSRVK 116

Query: 345 DRYE 334
              E
Sbjct: 117 RALE 120


>SB_23199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 532 GRGSRGTEEDDGHQFNGGDHDGDRADSN 449
           G G    ++DDG  ++ GD+D D  D+N
Sbjct: 191 GGGGDDDDDDDGGDYDDGDYDDDDDDAN 218


>SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 138 CMLVTYAIFMLVLMALKLTLGVMVFVNLD 224
           C+L TY  FML+L+  ++T+ V + +  D
Sbjct: 46  CLLKTYFSFMLILVVAEVTIAVYLLIEKD 74


>SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 278  LGLAGR-SCHPVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVAL 129
            L + GR  C P+ DS  + V + +HH+       H H      G +H + L
Sbjct: 858  LRVGGRLRCAPLDDSLKFPVILPRHHHLVNLIVKHYHDVSGHSGREHVLGL 908


>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
          Length = 260

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 191 QFQCHQHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNH 69
           Q Q  QHQH+ +   + A +  DG + S E  D S     H
Sbjct: 31  QLQQQQHQHQQQQQQQQAASPADGGSPSAENGDSSGPKRLH 71


>SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016)
          Length = 872

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 532 GRGSRGTEEDDGHQFNG-GDHDGDRADSNAI 443
           G+G+ G ++DD    +G GD +GD A S A+
Sbjct: 681 GKGATGEDDDDDDDDSGDGDENGDDATSVAV 711


>SB_58920| Best HMM Match : GRP (HMM E-Value=0.35)
          Length = 243

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 532 GRGSRGTEEDDGHQFNGGDHDGDRADSNAIVI 437
           G    G ++D G    G DHDGD   S  +V+
Sbjct: 183 GSNGNGGDDDGGDGCAGDDHDGDSDGSYVLVM 214


>SB_33162| Best HMM Match : EGF (HMM E-Value=1.2e-06)
          Length = 313

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 131 LPDGTAASEECNDESDAPNNHTGHRRYS 48
           LP+G + ++ C    + PNN T    YS
Sbjct: 277 LPEGASKTQICRHHDNGPNNDTSVNHYS 304


>SB_26373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 490 FNGGDHDGD-RADSNAIVIEECLQDFGAAGVRVD 392
           +N G+ DG  R   +A+V+ + ++D G   VR+D
Sbjct: 142 YNAGEPDGRVRPKLSALVLSQAMRDIGVKFVRID 175


>SB_22690| Best HMM Match : Collagen (HMM E-Value=0.042)
          Length = 593

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 517 GTEEDDGHQFNGGDHDGDRAD 455
           G +  DG   NGGD DGD  D
Sbjct: 32  GVDGSDGSNGNGGDDDGDDGD 52


>SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)
          Length = 1252

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -2

Query: 251  PVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEECNDESDAPNN 72
            P  D  +   EI +H  +   +  H   H+D   D   +    G  ++    D S++PN+
Sbjct: 1049 PDNDFQDDQEEIEEHRLSPSPW-LHSALHDDYSSDDDLMLNYLGPGSAGSAGDSSESPND 1107

Query: 71   HT 66
            H+
Sbjct: 1108 HS 1109


>SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013)
          Length = 611

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 490 FNGGDHDGD-RADSNAIVIEECLQDFGAAGVRVD 392
           +N G+ DG  R   +A+V+ + ++D G   VR+D
Sbjct: 100 YNAGEPDGRVRPKLSALVLSQAMRDIGVKFVRID 133


>SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9)
          Length = 295

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 535 CGRGSRGTEEDDGHQFNGGDHDGDRADSN 449
           CG G  G +  DG  ++G   DGD  DS+
Sbjct: 218 CGGGGGGGDVSDGDVYDGDVSDGDVYDSD 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,338,807
Number of Sequences: 59808
Number of extensions: 351074
Number of successful extensions: 1516
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)