Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00632
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    34   0.001
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.9  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   5.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   5.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   5.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   5.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.9  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 293 IEHRFSCCGPTGPGSYLSLTLPNTCCST---TPCTVINAYA-GCTEVLQ 427
           I+    CCG      Y    +P +CC++     C++ N+Y  GC E L+
Sbjct: 139 IQKNLQCCGVHSLSDYNDKPIPASCCNSPENNTCSISNSYTNGCVEALK 187



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = +3

Query: 126 RESNCMLVTYAIFMLVLMALKLTLGVMVFV 215
           RES+CM +T+A F+L ++ +++ + V  F+
Sbjct: 75  RESHCMTITFASFLLFILLVQIAVAVYAFI 104


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 35  RDQLQSSAGGLYDCWGHRFHHCILRMLRCHQG 130
           RD  + + GG+Y    H  HH     +  H G
Sbjct: 263 RDSRRKNYGGVYHLDNHHVHHANHHAILGHSG 294


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 92  HHCILRMLRCHQGEQLHACHL-RDLHAGVD 178
           +HC L    CH G  L    L R LH  ++
Sbjct: 127 NHCELHRAACHSGSSLTKSRLMRCLHHDIE 156


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 107 RMLRCHQGEQLHACHL 154
           R LR H GE+ +AC L
Sbjct: 55  RHLRVHTGERPYACEL 70


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 526 GSRGTEEDDGHQFNGGDHDGDRAD 455
           G    + DDG   N GD    RAD
Sbjct: 190 GLNRRDSDDGSDGNDGDESSCRAD 213


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 101 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSE 9
           CN+E       T  +RYS +   + + Y +E
Sbjct: 23  CNEEEKLLEERTSRKRYSRSREREQNSYKNE 53


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 101 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSE 9
           CN+E       T  +RYS +   + + Y +E
Sbjct: 23  CNEEEKLLEERTSRKRYSRSREREQNSYKNE 53


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 101 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSE 9
           CN+E       T  +RYS +   + + Y +E
Sbjct: 23  CNEEEKLLEERTSRKRYSRSREREQNSYKNE 53


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 101 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSE 9
           CN+E       T  +RYS +   + + Y +E
Sbjct: 23  CNEEEKLLEERTSRKRYSRSREREQNSYKNE 53


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 210 TPLRPRSVSVPSTP 169
           TPL+PR  S+ S+P
Sbjct: 892 TPLQPRFYSISSSP 905


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,750
Number of Sequences: 438
Number of extensions: 2714
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)