Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00632
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger) fa... 35 0.054
At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger) fa... 35 0.054
At5g55030.2 68418.m06856 expressed protein 32 0.38
At5g55030.1 68418.m06855 expressed protein 32 0.38
At2g36295.1 68415.m04454 expressed protein 30 1.5
At1g28695.1 68414.m03534 expressed protein ; expression supporte... 29 2.0
At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein le... 28 4.7
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 28 6.2
At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH) domain... 28 6.2
At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH) domain... 28 6.2
At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH) domain... 28 6.2
At5g17530.2 68418.m02057 phosphoglucosamine mutase family protei... 27 8.2
At5g17530.1 68418.m02056 phosphoglucosamine mutase family protei... 27 8.2
At1g78420.1 68414.m09138 expressed protein 27 8.2
At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family pr... 27 8.2
At1g19430.1 68414.m02421 dehydration-responsive protein-related ... 27 8.2
>At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger)
family protein contains INTERPRO domain, IPR001841, RING
finger
Length = 320
Score = 34.7 bits (76), Expect = 0.054
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -2
Query: 392 LPYRGSSSSTYWAGSRIGTSPDPLDHSS*IYAR*HGTYLGLAGRSCHPVRDSSNYSV--E 219
LP RGSSSST + +R T+ I++ + + S RD++N + E
Sbjct: 230 LPSRGSSSSTQSSQNR-STNGRENSRRRNIFSN-LWPFRSSSSSSTQNRRDTNNTATAEE 287
Query: 218 IHKHHYAQGQFQCHQHQHEDR 156
H HH+ Q Q Q HQHQH+ +
Sbjct: 288 GHYHHHQQQQQQ-HQHQHQQQ 307
>At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger)
family protein contains INTERPRO domain, IPR001841, RING
finger
Length = 320
Score = 34.7 bits (76), Expect = 0.054
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -2
Query: 392 LPYRGSSSSTYWAGSRIGTSPDPLDHSS*IYAR*HGTYLGLAGRSCHPVRDSSNYSV--E 219
LP RGSSSST + +R T+ I++ + + S RD++N + E
Sbjct: 230 LPSRGSSSSTQSSQNR-STNGRENSRRRNIFSN-LWPFRSSSSSSTQNRRDTNNTATAEE 287
Query: 218 IHKHHYAQGQFQCHQHQHEDR 156
H HH+ Q Q Q HQHQH+ +
Sbjct: 288 GHYHHHQQQQQQ-HQHQHQQQ 307
>At5g55030.2 68418.m06856 expressed protein
Length = 639
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 535 CGRGSRGTEEDDGHQFNGGDHDGDRADSNAIVIEECLQDFGAAGVRVDY 389
CGR EED + D GDR++S E ++ F A G+ ++
Sbjct: 112 CGRKLSVVEEDRRATYEDSDQQGDRSESIFTTFESEIKQFVAVGLHAEH 160
>At5g55030.1 68418.m06855 expressed protein
Length = 639
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 535 CGRGSRGTEEDDGHQFNGGDHDGDRADSNAIVIEECLQDFGAAGVRVDY 389
CGR EED + D GDR++S E ++ F A G+ ++
Sbjct: 112 CGRKLSVVEEDRRATYEDSDQQGDRSESIFTTFESEIKQFVAVGLHAEH 160
>At2g36295.1 68415.m04454 expressed protein
Length = 113
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 538 CCGRGSRGTEEDDGHQFNGGDHDGD 464
C G +RGTEE++ + N +HDG+
Sbjct: 4 CVGLVNRGTEEEEKQEANEPEHDGE 28
>At1g28695.1 68414.m03534 expressed protein ; expression supported
by MPSS
Length = 329
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 304 IQLLWSNGSGLVPILDPAQYVLLDDPLYGNQRVRRLH 414
++ W G G +P+LD V +D Y R +RLH
Sbjct: 84 LESFWE-GEGTLPLLDHLMVVAVDQTAYDRCRFKRLH 119
>At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein
leucine zipper-containing protein - Lycopersicon
esculentum, EMBL:Z12127 contains Pfam domain PF03081:
Exo70 exocyst complex subunit;
Length = 653
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 209 HHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEECNDE 90
HH+A + H H+ ED +H+ L T S+ + E
Sbjct: 7 HHHANESSENHDHKSEDHENKQHSDELHSSTPESQSESSE 46
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = -2
Query: 266 GRSCHPVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDR 156
G +P N+ + H HH Q Q H H H+ +
Sbjct: 133 GLPLYPPDIIPNHQLHPHPHHQQQQQHNHHHHHHQQQ 169
>At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 532 GRGSRGTEEDDGHQFNGGDHDGDRADSNA 446
GR S EDDGH + G G RAD N+
Sbjct: 244 GRSSEREREDDGHSSSRG--SGARADDNS 270
>At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 532 GRGSRGTEEDDGHQFNGGDHDGDRADSNA 446
GR S EDDGH + G G RAD N+
Sbjct: 244 GRSSEREREDDGHSSSRG--SGARADDNS 270
>At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 532 GRGSRGTEEDDGHQFNGGDHDGDRADSNA 446
GR S EDDGH + G G RAD N+
Sbjct: 244 GRSSEREREDDGHSSSRG--SGARADDNS 270
>At5g17530.2 68418.m02057 phosphoglucosamine mutase family protein
low similarity to phosphoglucomutase/phosphomannomutase
[Sphingomonas paucimobilis] GI:6103619; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 581
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = -3
Query: 307 ESMLDDMERILVLLEGLVIQFGIAATTPSRFTNTITPKVSF 185
+++L+ + R L + V+QFG+A+T P+ F +T+T SF
Sbjct: 121 QTLLEAVSRGLGVSGLDVVQFGLAST-PAMFNSTLTEDESF 160
>At5g17530.1 68418.m02056 phosphoglucosamine mutase family protein
low similarity to phosphoglucomutase/phosphomannomutase
[Sphingomonas paucimobilis] GI:6103619; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 581
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = -3
Query: 307 ESMLDDMERILVLLEGLVIQFGIAATTPSRFTNTITPKVSF 185
+++L+ + R L + V+QFG+A+T P+ F +T+T SF
Sbjct: 121 QTLLEAVSRGLGVSGLDVVQFGLAST-PAMFNSTLTEDESF 160
>At1g78420.1 68414.m09138 expressed protein
Length = 401
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = -2
Query: 194 GQFQCHQHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNHTGHRRYSEAG 39
G+ H H H V LP + + E D +NH HR + E G
Sbjct: 289 GESSSHNHNHNVNVSSYSM--LPGNCDSYYDIEQEVDGIDNHHHHRHHYEMG 338
>At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 258
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = -2
Query: 179 HQHQHEDRV--GDKHAVALPD 123
HQHQH + V D HA LPD
Sbjct: 45 HQHQHHNNVLSSDHHAFLLPD 65
>At1g19430.1 68414.m02421 dehydration-responsive protein-related low
similarity to early-responsive to dehydration stress
ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 724
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 526 GSRGTEEDDGHQFNGGDHDGDRADSNAIVIEE 431
G GTE D + G+ DG DS+A V EE
Sbjct: 158 GEEGTESDGNEGESDGNGDGSVDDSSASVDEE 189
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,750,429
Number of Sequences: 28952
Number of extensions: 224279
Number of successful extensions: 717
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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