Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00630
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    72   7e-14
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    52   8e-08
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    52   1e-07
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    28   1.5  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   1.9  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   4.5  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    26   5.9  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 31/55 (56%), Positives = 39/55 (70%)
 Frame = +3

Query: 3   AKSKNHTNHNQNRKAHRNGINKPRKTRHASTLGMDPKFLRNHRFCKNGNLKPAKQ 167
           AKSKNHTNHNQN+KAHRNGI +P+K R+ S    D KF RN +F   G ++  +Q
Sbjct: 2   AKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56


>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 24/48 (50%), Positives = 33/48 (68%)
 Frame = +1

Query: 367 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLR 510
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL+R
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIR 60



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +3

Query: 513 SKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 617
           S+DKRA K  K+RLGT  RAK K EEL++V+   R
Sbjct: 62  SQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 24/48 (50%), Positives = 33/48 (68%)
 Frame = +1

Query: 367 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLR 510
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL+R
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIR 60



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +3

Query: 513 SKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 617
           S+DKRA K  K+RLGT  RAK K EEL++V+   R
Sbjct: 62  SQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 644 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 519
           +V SL G    L +  A+FFT PL ++VCA + +   +  ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 580 SVKNLATCSLR*GRQPPRLITITI 651
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 453  STRSCRTRSI*EEGYGVT*VSKDKRALKFLKRRLGTHIRAKRKR 584
            +TR+C T+S+ EEG+    VS + +  +FL   L   I+ K K+
Sbjct: 928  ATRACLTQSLEEEGFPSRNVSNEIKR-RFLTDLLKARIKDKVKQ 970


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 189 FSQPPSRVALLASGY 145
           FSQPP R AL  SGY
Sbjct: 138 FSQPPFRFALFFSGY 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,494
Number of Sequences: 5004
Number of extensions: 43452
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)