Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00630
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       77   2e-14
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     54   8e-08
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    54   1e-07
05_03_0661 - 16726958-16726966,16727133-16727234                       53   2e-07
07_03_0078 - 13147741-13148913                                         30   1.5  
02_05_0767 + 31609773-31610174,31610409-31610501,31610608-316106...    28   8.1  

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 33/51 (64%), Positives = 39/51 (76%)
 Frame = +3

Query: 3   AKSKNHTNHNQNRKAHRNGINKPRKTRHASTLGMDPKFLRNHRFCKNGNLK 155
           AKSKNHT HNQ+ KAH+NGI KP++ R  ST GMDPKFLRN R+ +  N K
Sbjct: 2   AKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 25/36 (69%), Positives = 30/36 (83%)
 Frame = +3

Query: 510 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 617
           V KDKRALK  KR+LGTH RAK+KREE++ VL +MR
Sbjct: 66  VGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 40/73 (54%)
 Frame = +1

Query: 301 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 480
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR+L+REV G A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55

Query: 481 YEKRAMELLRCQK 519
           YEKR  ELL+  K
Sbjct: 56  YEKRITELLKVGK 68


>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 32/73 (43%), Positives = 40/73 (54%)
 Frame = +1

Query: 301 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 480
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR L+REVVG A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55

Query: 481 YEKRAMELLRCQK 519
           YEKR  ELL+  K
Sbjct: 56  YEKRITELLKVGK 68



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 24/36 (66%), Positives = 30/36 (83%)
 Frame = +3

Query: 510 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 617
           V KDKRALK  KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 66  VGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +3

Query: 3   AKSKNHTNHNQNRKAHRNGINKPRKTRHASTLGMD 107
           AKSKNHT HNQ+ KAH+NGI KP++ R  ST G +
Sbjct: 2   AKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 404 AGLILMALSVIPLRPADILVVLWPF 330
           AGL+  AL VIP  P  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


>02_05_0767 +
           31609773-31610174,31610409-31610501,31610608-31610668,
           31610797-31610865,31611274-31611440
          Length = 263

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 101 AKGGCVPGLPWLVDTVSVSFAV 36
           A+  CV G PW+ +T S +FA+
Sbjct: 238 AESKCVTGAPWVSNTQSTTFAI 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,003,492
Number of Sequences: 37544
Number of extensions: 294767
Number of successful extensions: 754
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)