Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00630
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)              66   3e-11
SB_46229| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_45611| Best HMM Match : p450 (HMM E-Value=0)                        28   6.3  
SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)                   28   8.3  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_6986| Best HMM Match : Ribosomal_L29e (HMM E-Value=1.6)             28   8.3  

>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
          Length = 100

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 37/69 (53%), Positives = 43/69 (62%)
 Frame = +1

Query: 313 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 492
           +AVGL+KGHK TK             + +P+R KG   K  KFVRD+VREVVG A YEKR
Sbjct: 1   MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50

Query: 493 AMELLRCQK 519
            MELLR  K
Sbjct: 51  VMELLRIGK 59



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = +3

Query: 510 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 620
           + KDKRALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 57  IGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93


>SB_46229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 6   KSKNHT-NHNQNRKAHRNGINKPRKTRHASTLGMDPKFLRNHRFC 137
           K KN   N N++   + N  N  +K+ H S  G    F   ++FC
Sbjct: 33  KDKNRNKNSNRSSNNNNNNNNSDKKSDHTSNNGSTLYFAAKYKFC 77


>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 42  KAHRNGINKPRKTRHASTLGM 104
           K HRNGI KPR  R+ S  G+
Sbjct: 175 KWHRNGIKKPRTNRYPSLKGV 195


>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
          Length = 847

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +3

Query: 513 SKDKRALKFLKRRLGTHIRAKRKREELSN 599
           +K  RALKFLK RL   +R KR  E L N
Sbjct: 59  NKSPRALKFLKTRL-QDLRKKRDSETLRN 86


>SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)
          Length = 582

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 147 YRSCKTCDSVKILDPCQGWMRAWSSLAC*YRFCELCG 37
           Y++C  C    +      +MR W   AC  +FC  CG
Sbjct: 527 YKNCGRCKQKNLKQQKNNFMRCW---ACKTQFCYQCG 560


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 157 QQSNSRGRLREKLPEKQRPRNE 222
           ++  SRGR  EK PEKQR +++
Sbjct: 263 ERGGSRGRSAEKSPEKQRDKSD 284


>SB_6986| Best HMM Match : Ribosomal_L29e (HMM E-Value=1.6)
          Length = 371

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 6   KSKNHTNHNQNRKAHRNGINKPRKTRHA-STLGMDPKFLRNHRFCKNGNLKPAKQ 167
           +S N T HN+N++A ++G  + ++ RH  S      K + +H    NG  K +K+
Sbjct: 216 RSNNVTKHNRNQQA-KDGEPRKKRLRHGESDHAQRAKIIEDH---ANGRSKESKE 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,178
Number of Sequences: 59808
Number of extensions: 353645
Number of successful extensions: 1007
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)