Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00630
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical pr...    72   3e-13
U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    60   1e-09
AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical...    56   3e-08
AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical ...    45   6e-05
U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF154004-1|AAD38186.1|  330|Caenorhabditis elegans cyclin-depend...    28   5.5  
AC024766-2|AAK68887.2|  330|Caenorhabditis elegans Cyclin-depend...    28   5.5  
Z77652-10|CAI70404.1|  307|Caenorhabditis elegans Hypothetical p...    27   9.7  
U41019-2|AAA82328.1|  518|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical
           protein B0513.3 protein.
          Length = 62

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/49 (63%), Positives = 37/49 (75%)
 Frame = +3

Query: 3   AKSKNHTNHNQNRKAHRNGINKPRKTRHASTLGMDPKFLRNHRFCKNGN 149
           AKSKNHTNHNQN+KAHRNGI KP+K    S  G+D KF++N RF +  N
Sbjct: 2   AKSKNHTNHNQNKKAHRNGITKPKKHIFLSMKGVDAKFIKNLRFSRKNN 50


>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = +3

Query: 510 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 620
           +SKDKRALKFLKRR+GTH RAK KREEL NV+   RK
Sbjct: 65  ISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101



 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 29/69 (42%), Positives = 42/69 (60%)
 Frame = +1

Query: 313 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 492
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 493 AMELLRCQK 519
            +E+LR  K
Sbjct: 59  VLEMLRISK 67


>AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical
           protein Y47H9C.14 protein.
          Length = 87

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/48 (50%), Positives = 32/48 (66%)
 Frame = +3

Query: 6   KSKNHTNHNQNRKAHRNGINKPRKTRHASTLGMDPKFLRNHRFCKNGN 149
           K +NHTNHN+N KAHRNGI KP+K    S  G   +F+++ RF +  N
Sbjct: 14  KPENHTNHNRNNKAHRNGITKPKKHIFLSIEGSRRQFIKSLRFFRKNN 61


>AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical
           protein Y37H9A.5 protein.
          Length = 167

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +3

Query: 6   KSKNHTNHNQNRKAHRNGINKPR 74
           KSKNHTNHNQN  AHR GI KP+
Sbjct: 80  KSKNHTNHNQNNTAHRIGITKPK 102


>U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical
           protein F54D8.6 protein.
          Length = 783

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 189 FSQPPSRVALLASGYRSCKTCDSVKI 112
           F +PP R +L  SG RS K CD +K+
Sbjct: 391 FVRPPMRKSLFLSGARSGKRCDRIKM 416


>AF154004-1|AAD38186.1|  330|Caenorhabditis elegans cyclin-dependent
           kinase 7 homolog protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 470 DTLNMRRGLWSYLGVKRQACSEVLEATIGHTHP 568
           D L++  G+W++  +KR  C++ L+     T P
Sbjct: 261 DLLDLMAGMWTFDPIKRLTCTQSLQMEYFRTQP 293


>AC024766-2|AAK68887.2|  330|Caenorhabditis elegans Cyclin-dependent
           kinase familyprotein 7 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 470 DTLNMRRGLWSYLGVKRQACSEVLEATIGHTHP 568
           D L++  G+W++  +KR  C++ L+     T P
Sbjct: 261 DLLDLMAGMWTFDPIKRLTCTQSLQMEYFRTQP 293


>Z77652-10|CAI70404.1|  307|Caenorhabditis elegans Hypothetical
           protein C06B3.12 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -3

Query: 98  KGGCVPGLPWLVDTVSVSFAVLVMICMIL 12
           + GC P + W+   ++  F ++ ++CM+L
Sbjct: 159 RSGCPPKVHWITQFLASYFWIVPVVCMVL 187


>U41019-2|AAA82328.1|  518|Caenorhabditis elegans Hypothetical
           protein C04E7.3 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 12  KNHTNHNQNRKAHRNGINKPRKTRHASTLGMDPKFLRNHRFCKNGNLK 155
           K   +  Q R   +   N+    +  S    +  FLRN R+ K+GNLK
Sbjct: 319 KRDNDRYQRRSQLKTANNRELAKKMMSMERNEVDFLRNARYSKHGNLK 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,381,494
Number of Sequences: 27780
Number of extensions: 246799
Number of successful extensions: 625
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)