Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00630
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi...    81   7e-16
At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi...    81   7e-16
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    57   1e-08
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    57   1e-08
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            57   1e-08
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    48   8e-06
At1g04030.1 68414.m00390 expressed protein                             31   0.96 
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A...    29   2.9  
At1g04450.1 68414.m00437 p21-rho-binding domain-containing prote...    29   3.9  
At4g37950.1 68417.m05365 expressed protein                             28   6.8  
At1g34590.1 68414.m04299 hypothetical protein                          28   6.8  

>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
           to ribosomal protein L29 GI:7959366 [Panax ginseng]
          Length = 61

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 34/51 (66%), Positives = 40/51 (78%)
 Frame = +3

Query: 3   AKSKNHTNHNQNRKAHRNGINKPRKTRHASTLGMDPKFLRNHRFCKNGNLK 155
           AKSKNHT HNQ+ KAH+NGI KPR+ RH  T GMDPKFLRN R+ +  N+K
Sbjct: 2   AKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52


>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
           to 60S ribosomal protein L29 GB:P25886 from (Rattus
           norvegicus)
          Length = 83

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 34/51 (66%), Positives = 40/51 (78%)
 Frame = +3

Query: 3   AKSKNHTNHNQNRKAHRNGINKPRKTRHASTLGMDPKFLRNHRFCKNGNLK 155
           AKSKNHT HNQ+ KAH+NGI KPR+ RH  T GMDPKFLRN R+ +  N+K
Sbjct: 24  AKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74


>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 27/36 (75%), Positives = 31/36 (86%)
 Frame = +3

Query: 510 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 617
           V KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  VGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 28/67 (41%), Positives = 36/67 (53%)
 Frame = +1

Query: 319 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 498
           VGL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 499 ELLRCQK 519
           ELL+  K
Sbjct: 58  ELLKVGK 64


>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 27/36 (75%), Positives = 31/36 (86%)
 Frame = +3

Query: 510 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 617
           V KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 66  VGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 27/67 (40%), Positives = 37/67 (55%)
 Frame = +1

Query: 319 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 498
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 499 ELLRCQK 519
           ELL+  K
Sbjct: 62  ELLKVGK 68


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 27/36 (75%), Positives = 31/36 (86%)
 Frame = +3

Query: 510 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 617
           V KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 66  VGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 28/67 (41%), Positives = 36/67 (53%)
 Frame = +1

Query: 319 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 498
           VGL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 499 ELLRCQK 519
           ELL+  K
Sbjct: 62  ELLKVGK 68


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 27/67 (40%), Positives = 37/67 (55%)
 Frame = +1

Query: 319 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 498
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 499 ELLRCQK 519
           ELL+  K
Sbjct: 62  ELLKVAK 68



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 21/29 (72%), Positives = 25/29 (86%)
 Frame = +3

Query: 531 LKFLKRRLGTHIRAKRKREELSNVLAQMR 617
           LK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 64  LKVAKRKLGTHKRAKRKREEMSSVLRKMR 92


>At1g04030.1 68414.m00390 expressed protein
          Length = 418

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 3   AKSKNHTNHNQNRKAHRNGINKPRKTRHASTLGMDPK 113
           AKSK  T   Q++K + N I    + R +S+ G DP+
Sbjct: 217 AKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQ 253


>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845
          Length = 400

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 12  KNHTNHNQNRKAHRNGINKPRKTRHASTLG 101
           KNHT H++ R ++  G    RKT   +T G
Sbjct: 88  KNHTFHHKMRMSYSEGSKMKRKTHRNTTFG 117


>At1g04450.1 68414.m00437 p21-rho-binding domain-containing protein
           contains Pfam PF00786: P21-Rho-binding domain
          Length = 220

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 6   KSKNHTNHNQNRKAHRNGINKPRKTRHASTLGMDPKFLRNHRFCKNGNL 152
           K K+     ++    +NG + PR+   AS   M PK  R H   ++G++
Sbjct: 92  KPKHKKTRRKSETVSQNG-SPPRRNSSASASDMQPKNTRRHHRSRHGSI 139


>At4g37950.1 68417.m05365 expressed protein 
          Length = 678

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 1   WQSQ-RIIQIITKTAKLTETVSTSQGRPGTHPPLAWIQNFYGITGFARTVT 150
           WQ++ +  Q  T+  K+    + +  RPGT+   AW+  F G   + R +T
Sbjct: 411 WQTENKGYQFWTRADKMG-MFTIANVRPGTYSLYAWVSGFIGDYKYVRDIT 460


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 289 EIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 408
           ++ AP  E A     GH++ +  A + G+TD+A  + PA+
Sbjct: 772 DLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,808,747
Number of Sequences: 28952
Number of extensions: 237314
Number of successful extensions: 686
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)