Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00629X
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   4.4  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   5.9  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    25   7.7  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 263 LIIPWKSWKRSARTTFTLISCEEIYLLIHP 352
           L IPW + +  + T    I+ E+IYL IHP
Sbjct: 66  LEIPWSNLRNKSLT----INIEDIYLSIHP 91


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 126 IFLFSNPLSCHQCYTGHYE 70
           + LFS PL CH C    Y+
Sbjct: 292 LVLFSYPLQCHPCRNSVYQ 310


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 301 YYIYLNILRRNLSTNSSCNIYRPCI 375
           YY  +N+L  NL+ N S N   P I
Sbjct: 369 YYKSINLLSTNLTPNMSANSVDPAI 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,099
Number of Sequences: 5004
Number of extensions: 37970
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)