Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00629X
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502...    29   2.0  
01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191...    28   4.5  
05_01_0172 + 1194563-1194934,1196051-1196120,1196769-1196833,119...    27   7.9  

>11_04_0160 +
           14247463-14247584,14247710-14247923,14250099-14250215,
           14251578-14251670,14251748-14251922,14252981-14253017,
           14253842-14253875,14254212-14254481,14255768-14255872,
           14256295-14256392,14256474-14256616,14257197-14257290,
           14257378-14257487,14258018-14258172,14258252-14258332,
           14258415-14258535,14259358-14259464,14259537-14259668,
           14261105-14261258,14264094-14264211,14264344-14264517,
           14264831-14264882,14265450-14265577,14265670-14265820,
           14265904-14266242
          Length = 1107

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 233 KYSLV-F*DTNLIIPWKSWKRSARTTFTLISCEEIYLLIHPATSIDPVSCW 382
           KY+L+ F   NL   W+ ++R     F LI+C +++ LI P   ++P S W
Sbjct: 25  KYTLLNFLPKNL---WEQFRRFMNQYFLLIACLQLWSLITP---VNPASTW 69


>01_06_1397 -
           37017468-37017561,37017763-37017836,37019128-37019193,
           37019543-37019623,37019735-37019943,37020096-37020192,
           37020497-37020514,37020597-37020727,37021040-37021088,
           37021450-37021539,37021616-37021721,37021815-37021885,
           37021963-37022037,37022059-37022120,37022677-37022887,
           37023599-37024069,37024387-37024719
          Length = 745

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +2

Query: 299 RTTFTLISCEEIYLLIHPATSIDPVSCWWLCVVKS 403
           ++   ++  EE++L+  P+  ++ V C+W C V+S
Sbjct: 111 KSAVVVVGDEELHLVAMPS-KVEKVPCFWCCSVRS 144


>05_01_0172 +
           1194563-1194934,1196051-1196120,1196769-1196833,
           1197608-1197958
          Length = 285

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/26 (34%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = -2

Query: 260 WYLRI-LVSIFFSLISLIYLVIFTFS 186
           W LR+ L ++FF +++L++ ++F F+
Sbjct: 17  WLLRLYLFAMFFIVVALLFFIVFAFA 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,261,137
Number of Sequences: 37544
Number of extensions: 240435
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)