Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00629X
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19511| Best HMM Match : Glycos_transf_1 (HMM E-Value=6.2e-23)       28   4.6  
SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)              28   6.1  
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_19511| Best HMM Match : Glycos_transf_1 (HMM E-Value=6.2e-23)
          Length = 496

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -2

Query: 239 SIFFSLISLIYLVIFTFSRYF--VTFNSYSH 153
           SIFFS+ISL YL+I T   Y   VT NS +H
Sbjct: 22  SIFFSVISL-YLLILTMRFYVRKVTKNSLTH 51


>SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)
          Length = 691

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 424 NNPRPKQLLPVTCLIAAECSCSSRRYPPLHTADSVSLRDIVA 549
           + P+ K    VTCL+  +     R  P LHT     L D+V+
Sbjct: 4   STPQEKDEKDVTCLLCLDIFTDPRLLPCLHTYCKKCLEDLVS 45


>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 418 IVNNPRPKQLLPVTCLIAAECSCSSRRYPP 507
           + NN  P + +P+   +A  CS   R+Y P
Sbjct: 233 VQNNATPTRAVPICMTVALGCSSDGRKYLP 262


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,597,757
Number of Sequences: 59808
Number of extensions: 283393
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)