Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00629X
         (567 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76733-1|AAB33323.1|   55|Homo sapiens fibroblast growth factor ...    30   6.5  
AJ437318-1|CAD24817.1|  454|Homo sapiens 5-hydroxytryptamine 3-r...    30   6.5  

>S76733-1|AAB33323.1|   55|Homo sapiens fibroblast growth factor
           receptor 3 protein.
          Length = 55

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 423 EQSKAEAIVTCYLPYRCGMLLFVAPISAVTYC*LCKSP 536
           E  +A ++    L YR G  LF+  ++AVT C L   P
Sbjct: 5   EADEAGSVYAGILSYRVGFFLFILVVAAVTLCRLRSPP 42


>AJ437318-1|CAD24817.1|  454|Homo sapiens 5-hydroxytryptamine
           3-receptor subunit D protein.
          Length = 454

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 256 YQSHHPVEILEKICAYYIYLNILRRNLSTNSSCNIYRPCILLVAVRRKILQIKFIVNNPR 435
           +Q HH      +    ++ L I +R +    + N Y   I  VA+RR+     ++VN   
Sbjct: 181 FQIHHRTSFRTR--REWVLLGIQKRTIKVTVATNQYEQAIFHVAIRRRCRPSPYVVNFLV 238

Query: 436 PKQLL 450
           P  +L
Sbjct: 239 PSGIL 243


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,860,655
Number of Sequences: 237096
Number of extensions: 1334783
Number of successful extensions: 2941
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2941
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)