Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00629X
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13019-10|AAC24442.1| 757|Caenorhabditis elegans Hypothetical p... 29 3.1
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 28 5.4
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 28 5.4
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 28 5.4
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 28 5.4
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 28 5.4
AF000266-9|AAC71169.1| 566|Caenorhabditis elegans Hypothetical ... 27 7.1
Z81017-12|CAD91635.1| 394|Caenorhabditis elegans Hypothetical p... 27 9.4
Z78537-3|CAD91626.1| 394|Caenorhabditis elegans Hypothetical pr... 27 9.4
>U13019-10|AAC24442.1| 757|Caenorhabditis elegans Hypothetical
protein T12A2.2 protein.
Length = 757
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 242 VSIFFSLISLIYLVIFTFSRYFVTFNSYSH 153
V S+I +I+L++F +VT N+YSH
Sbjct: 478 VRTIISIILVIFLLMFVVHATYVTSNAYSH 507
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 254 LRILVSIFFSLISLIYLVIFTFSR-YFVTFNSY 159
L I VS FF +I L+ L +FT + ++TF+S+
Sbjct: 15 LFINVSFFFLIIGLLVLGVFTIKKNTYITFDSW 47
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = -1
Query: 441 LRPWIVHDEFYLQDFTTHSHQQDTGSIDVAG*ISR*ISSQDIKVNVVRADLFQDFHGMMR 262
+RPW +++ FY+ + H+ D G + R +++++I A +F +F G++
Sbjct: 294 IRPWFIYNGFYILEKARHNRIIDIHRTVFLGGLPRIVTAEEI------AQMFSEF-GVVL 346
Query: 261 LVS 253
LV+
Sbjct: 347 LVT 349
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = -1
Query: 441 LRPWIVHDEFYLQDFTTHSHQQDTGSIDVAG*ISR*ISSQDIKVNVVRADLFQDFHGMMR 262
+RPW +++ FY+ + H+ D G + R +++++I A +F +F G++
Sbjct: 294 IRPWFIYNGFYILEKARHNRIIDIHRTVFLGGLPRIVTAEEI------AQMFSEF-GVVL 346
Query: 261 LVS 253
LV+
Sbjct: 347 LVT 349
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = -1
Query: 441 LRPWIVHDEFYLQDFTTHSHQQDTGSIDVAG*ISR*ISSQDIKVNVVRADLFQDFHGMMR 262
+RPW +++ FY+ + H+ D G + R +++++I A +F +F G++
Sbjct: 80 IRPWFIYNGFYILEKARHNRIIDIHRTVFLGGLPRIVTAEEI------AQMFSEF-GVVL 132
Query: 261 LVS 253
LV+
Sbjct: 133 LVT 135
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = -1
Query: 441 LRPWIVHDEFYLQDFTTHSHQQDTGSIDVAG*ISR*ISSQDIKVNVVRADLFQDFHGMMR 262
+RPW +++ FY+ + H+ D G + R +++++I A +F +F G++
Sbjct: 294 IRPWFIYNGFYILEKARHNRIIDIHRTVFLGGLPRIVTAEEI------AQMFSEF-GVVL 346
Query: 261 LVS 253
LV+
Sbjct: 347 LVT 349
>AF000266-9|AAC71169.1| 566|Caenorhabditis elegans Hypothetical
protein W08F4.2 protein.
Length = 566
Score = 27.5 bits (58), Expect = 7.1
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +1
Query: 247 ILRYQSHHPVEILEKICAYYIYLNILRRNLSTNSSCNIYRPCILLVAVRRKILQIKFIVN 426
++RY +H + +++ Y LNI+R ++TN N C LL LQ I N
Sbjct: 122 LVRY--YHSRILCKEVLEYISVLNIVRLIMNTNYIGN----CHLLRLF--PTLQTLIIAN 173
Query: 427 NPRPKQLL 450
P PK LL
Sbjct: 174 GPLPKSLL 181
>Z81017-12|CAD91635.1| 394|Caenorhabditis elegans Hypothetical
protein C09F12.3 protein.
Length = 394
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 287 KRSARTTFTLISCEEIYLLIHPATSIDPVSCWWLCVVKSC 406
K+ R TF++++ +YL H V W L V + C
Sbjct: 278 KQELRATFSIVAIILLYLCFHSLKLFAVVRKWQLLVKREC 317
>Z78537-3|CAD91626.1| 394|Caenorhabditis elegans Hypothetical
protein C09F12.3 protein.
Length = 394
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 287 KRSARTTFTLISCEEIYLLIHPATSIDPVSCWWLCVVKSC 406
K+ R TF++++ +YL H V W L V + C
Sbjct: 278 KQELRATFSIVAIILLYLCFHSLKLFAVVRKWQLLVKREC 317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,625,254
Number of Sequences: 27780
Number of extensions: 214884
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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