Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00627
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    64   2e-11
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    63   3e-11
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    52   6e-08
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M...    27   1.9  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    27   1.9  
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.3  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   5.8  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   5.8  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   7.7  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   7.7  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
 Frame = +2

Query: 242 TCRSVGDALRALGQNPTESDVKKCTLHLKPDER--ISFEVFLPIYQAISKARSGDTANDF 415
           T   +G  +R+LGQ+PT ++++     +  D    I F  FL +     K +  D   + 
Sbjct: 30  TSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMAR--KMKDTDNEEEV 87

Query: 416 IEGLRHFDKDGNGFISSAELRHLLSTLGEKLVMMR*SNSCRTRRLSGN--INYENF 577
            E  + FDKDGNG+I+  EL H+L++LGE+L     ++  R     G+  INYE F
Sbjct: 88  REAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEF 143



 Score = 32.3 bits (70), Expect = 0.067
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +3

Query: 174 SEDQLAEFQEAFQLFDSRGDGKI 242
           +++Q+AEF+EAF LFD   DG I
Sbjct: 7   TDEQIAEFREAFSLFDRDQDGNI 29



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 410 DFIEGLRHFDKDGNGFISSAELRHLLSTLGE 502
           +F E    FD+D +G I+S EL  ++ +LG+
Sbjct: 13  EFREAFSLFDRDQDGNITSNELGVVMRSLGQ 43


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
 Frame = +2

Query: 251 SVGDALRALGQNPTESDVKKCTLHLKPDERISFEVFLPIYQAISKARSGDTANDFIEGLR 430
           S+GD LRA GQNPT +++ +    L P E +  E FL +    +         +F++G +
Sbjct: 27  SIGDLLRACGQNPTLAEITEIESTL-PAE-VDMEQFLQVLNRPNGFDMPGDPEEFVKGFQ 84

Query: 431 HFDKDGNGFISSAELRHLLSTLGEKLVMMR*SNSCRTRRL-SGNINYENFV 580
            FDKD  G I   ELR++L++LGEKL         +   +  G +NY +FV
Sbjct: 85  VFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNYHDFV 135


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 29/85 (34%), Positives = 49/85 (57%)
 Frame = +2

Query: 254 VGDALRALGQNPTESDVKKCTLHLKPDERISFEVFLPIYQAISKARSGDTANDFIEGLRH 433
           VG  LR+LG N T++++ K +  L   + I  + F+      +K R  ++  ++I+  R 
Sbjct: 31  VGSVLRSLGINVTDAELAKLSNEL--GDAIDEKKFMSFVS--NKLRETESEEEYIKAFRV 86

Query: 434 FDKDGNGFISSAELRHLLSTLGEKL 508
           FDKD +G+I +A+    + TLGEKL
Sbjct: 87  FDKDNSGYIETAKFADYMKTLGEKL 111


>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 201

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 76  AYILLLFDKSQPLNIPISLPSISFVDSQYALDIQRI--NWQNFKKPSSSSI 222
           A I LLF  +    IP++ P +  V   YA D  R+  +W  F  P   ++
Sbjct: 5   AVIALLFSLAAASPIPVADPGVVSVSKSYA-DFLRVYQSWNTFANPDRPNL 54


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 165 AGYSEDQLAEFQEAFQLFDSRGDGKI 242
           A  +  Q+ E +EAF L D  GDG I
Sbjct: 40  AQLTSSQIQELKEAFALLDKDGDGNI 65


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 174 SEDQLAEFQEAFQLFDSRGDGKI--HVAQSEMR 266
           +E+Q  +  EAF+LFDS  D  I  H  ++ MR
Sbjct: 32  TEEQRQDINEAFKLFDSDKDNAIDYHELRAAMR 64


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 120 TYFITFNFICRFTIC 164
           TY++T +++C FT C
Sbjct: 486 TYWVTLSYLCTFTCC 500


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 368 KLAETPQKISFHQV*DEEYIFSHLTL*DFVLKLLTHLRLSDMYLSI 231
           +L + P  +    V +E+Y F+  TL  FV+ LL  L L  + +S+
Sbjct: 169 RLIQIPFNLYSTFVIEEKYGFNKSTLKIFVIDLLKELSLGGLLMSV 214


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 350 EVFLPIYQAISKARSGDTANDFI--EGLRHFDKDGNGFISS-AELRHLLSTLGEK 505
           ++F+ +   I+K  +G    + I  +  RH DK GN F ++  EL  +L  +G+K
Sbjct: 643 DIFMSVTD-ITKIENGTKIYEEILQDCCRHIDKSGNEFTTAYLELLEVLLKVGQK 696


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 523 LPHHHKLLSESREQVSQFRRRDEPIAIFVKMAQTL 419
           +  HH + SE  +Q+   +R+ +P+ +  KMA  L
Sbjct: 760 ISEHHPMFSELVKQLYSKKRQGKPLKLSGKMAHGL 794


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,996
Number of Sequences: 5004
Number of extensions: 52561
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)