Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00625
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   5.9  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   5.9  

>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = -1

Query: 418 NISHFYALYLNSDTFMRYNINMRKIRLKQINANIFLNVEFVNDFIRDLYEMMIL*NDPYS 239
           NI  F      + +   +++N  ++ +   NA +F+N  +   F   L + M   N+ + 
Sbjct: 235 NIMSFLLSNNTNTSSYPFSVNGVELDVWNENAGVFINNIY---FGFSLSDAMKFENETFI 291

Query: 238 VKKINQISGCCN*NCLHKMKILMVM 164
            KKI + S C N   +    ILM++
Sbjct: 292 AKKILENSPCPNQPSIQPFGILMML 316


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 214 GCCN*NCLHKMKILMVMKLNFC 149
           GC +  CLH + IL   K++FC
Sbjct: 374 GCSHVFCLHCLIILQKQKVDFC 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,490
Number of Sequences: 5004
Number of extensions: 38441
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)