Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00625
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0391 - 23740603-23740665,23740805-23740927,23741009-237411...    33   0.12 
10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329...    27   8.0  
01_02_0091 - 11023912-11024017,11024112-11024185,11024478-110248...    27   8.0  

>03_05_0391 -
           23740603-23740665,23740805-23740927,23741009-23741148,
           23741209-23741264,23742005-23742262,23743290-23743627
          Length = 325

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/64 (20%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = -1

Query: 460 QTRDILLVRRNE-I*NISHFYALYLNSDTFMRYNINMRKIRLKQINANIFLNVEFVNDFI 284
           +++D+ L++ +E +    H +  Y+N     +  +++ ++ + QI+  +    +F+ND +
Sbjct: 206 KSQDVTLLKNSEELTKKEHPFITYINKTEVNKVMVHIEEVEVNQISMKVLTQPQFLNDDV 265

Query: 283 RDLY 272
            D Y
Sbjct: 266 MDAY 269


>10_08_0176 +
           15432092-15432470,15432592-15432688,15432801-15432985,
           15433012-15433056,15433447-15433472,15435299-15435434,
           15435608-15435702
          Length = 320

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
 Frame = -1

Query: 235 KKINQISGCCN*NCLHKMKILMVMKLNFCAGEF---------*LTFSSIHFPEYGVSSRL 83
           +K+  + G C+   +H   +L VMKL   +GEF          L F S  FP Y V +R+
Sbjct: 194 EKLGCMPGPCDGGVVHIDCVLCVMKLKVSSGEFGLDVEDYLTGLCFMSNDFPRY-VVNRV 252

Query: 82  TLG 74
           T G
Sbjct: 253 TAG 255


>01_02_0091 -
           11023912-11024017,11024112-11024185,11024478-11024834,
           11024938-11025166,11025468-11025559,11026099-11026326,
           11027108-11027356,11027429-11027471,11027589-11027836,
           11027922-11028035,11028122-11028322,11028417-11028593,
           11028725-11028853,11029210-11029287,11029369-11029464,
           11029563-11029634,11031549-11031677,11032105-11032220,
           11033048-11033204,11033343-11033426,11033513-11033574,
           11034901-11035067,11035162-11035226,11035315-11035371,
           11035547-11035633,11036638-11036703,11036810-11036908
          Length = 1193

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 293 VHEFDI*KNISVDLFQSNFSHVDVVS 370
           + E D+ KNI VD+F+S+ S ++ +S
Sbjct: 674 LQEIDLSKNIGVDVFKSDGSFIEKIS 699


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,824,658
Number of Sequences: 37544
Number of extensions: 196620
Number of successful extensions: 362
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)