Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00625
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     27   8.2  

>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1460

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = +1

Query: 1   ASTSTSVLXASCTEWTTPPTKTDSVLRSSD*KHRTPESGYWRKSIKIHRHK-----NSTS 165
           A T  S +  +  EW  PPT+   +      K  T E+G W ++    R++     +ST+
Sbjct: 264 APTQASSIPTAAGEWAVPPTQPTKI------KENTQEAGKWSEAKIKQRYQPSIPFDSTA 317

Query: 166 SPSVFSFYVDN 198
           S   F+ ++D+
Sbjct: 318 SKQNFTVHIDD 328


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 37   TEWTTPPTKTDSVLRSSD*KHRTPES 114
            T WTTPP KT +  RSS     TPE+
Sbjct: 933  TPWTTPPVKTTTGTRSS--IETTPET 956


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +1

Query: 55  PTKTDSVLRSSD*KHRTPESGYWRKSIKIHRHKNSTSSPSVFSFYVDNF 201
           P K+ SV R  D +H  P   Y+R S    RH +S SSP+  S Y   F
Sbjct: 380 PDKS-SVGRIPDGEHLRPGCSYYRGSPPSSRHSHS-SSPTSSSTYPSPF 426


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,081
Number of Sequences: 59808
Number of extensions: 254838
Number of successful extensions: 565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)