Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00625
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 1   ASTSTSVLXASCTEWTTPPTKTDSVLRSSD*KHRTPESGYWRKSIKIHRHKNSTS 165
           AST++S   A+ T   +PPT T +   +S   H + +S   +  +K  + K+S S
Sbjct: 420 ASTTSSPTPAATTICISPPTTTQTSSSASSSPHSSTKSFLAKLGVKHEKEKDSIS 474


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 343 RLKQINANIFLNVEFVNDFIRDLYEMMI 260
           +L QIN   FLN     +F+ DL+ ++I
Sbjct: 83  KLLQINVTGFLNARRAREFVGDLWNLLI 110


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 294 FTNSTFRKILALICFSRIFLMLMLYLIKVSLFKYKA*KCE 413
           F  ST R    LICFSR F+   + L     + Y    C+
Sbjct: 41  FLTSTERTSFNLICFSRAFVNFYILLSSFLFYSYHPLFCK 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,349,906
Number of Sequences: 27780
Number of extensions: 208956
Number of successful extensions: 412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)