Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00625
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    27   0.099
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.8  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   2.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 27.5 bits (58), Expect = 0.099
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 12  YIGPXGFMYRVDYTADENGFRPKVKRLET 98
           Y  P G    + Y ADENGF+ +   + T
Sbjct: 77  YTAPDGQQVSITYVADENGFQVQGSHIPT 105


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -1

Query: 391 LNSDTFMRYNINMRKIRLKQINANIFLNVEFVNDFIRDL 275
           L  D  M         RLK  N   +LN  +   F+RDL
Sbjct: 58  LQFDVHMMLQFRYLDARLKFSNIAPYLNQIYGGQFVRDL 96


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 409 VKYFRFRCDELKVCL 453
           V Y   RCD++ +CL
Sbjct: 14  VSYMMVRCDDITLCL 28


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 490  NSKYKLHLPKQTRDILLVRRNE 425
            N   KLH+PK     +L R NE
Sbjct: 1481 NHNEKLHIPKDKSVSVLSRENE 1502


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 450 SRVCLGKCNLYLELS 494
           S  C G+C+ YL++S
Sbjct: 50  SYACRGRCSSYLQVS 64


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 158 QLHHHQYFH 184
           QLHHHQ  H
Sbjct: 813 QLHHHQSTH 821


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,951
Number of Sequences: 438
Number of extensions: 2620
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)