Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00624X
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 133 1e-32
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 31 0.10
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 27 1.6
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 2.2
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 2.9
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 25 5.0
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 25 5.0
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 25 5.0
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 6.6
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 25 6.6
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 25 6.6
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 8.7
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 25 8.7
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 25 8.7
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 8.7
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 8.7
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 133 bits (322), Expect = 1e-32
Identities = 56/84 (66%), Positives = 76/84 (90%)
Frame = +1
Query: 256 FPKLDDVHPFYADLMYVLYAKDHYKLRLGQLNTARHLIDNVAKDYVRLLKYRDSLYRCEQ 435
FPKL+D+HPF+ADL+ +LY +DH K+ L QL+TA+HL++NVA+DY+RLLKY DSLYRC+Q
Sbjct: 69 FPKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYRCKQ 128
Query: 436 LRRAALGRMATILKRPRANLTYLE 507
L+RAALGRMATI+KR +++L +LE
Sbjct: 129 LKRAALGRMATIIKRQKSSLEFLE 152
Score = 78.2 bits (184), Expect = 7e-16
Identities = 33/63 (52%), Positives = 46/63 (73%)
Frame = +2
Query: 68 FKKIAVVPTATDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVQYTQQNFHDRLSRI 247
FK I +P F+D++LS+TQRKTPTV+ +KISRIRGFY RKV++TQ ++L I
Sbjct: 6 FKNITPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITEKLDSI 65
Query: 248 IQD 256
+Q+
Sbjct: 66 LQE 68
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 31.1 bits (67), Expect = 0.10
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +2
Query: 23 DTKIALN*NKMSLYNFKKIAVVPTATDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRK 202
+TK+ LN ++S+ FKK + A+D +K + P V+++H F +
Sbjct: 298 ETKVYLNNERISISGFKKYVEMYLASD------TKPDEEPPRVIYEHVNDRWDVAFAVSD 351
Query: 203 VQYTQQNFHDRLSRI 247
Q+ Q +F + +S I
Sbjct: 352 GQFKQVSFVNNISTI 366
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 211 YPAELPRPTVQNYSGFPKLDDVHPFY 288
+P L RP + N G P D V P Y
Sbjct: 288 FPVRLARPALINAFGVPNYDSVVPMY 313
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 73 KNCCSPYSYGLYRHNFIEN 129
K+ SPYS G Y++N IEN
Sbjct: 501 KSSSSPYSRGPYKYNRIEN 519
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 74 KIAVVPTATDFIDIILSKTQRKTPTVVHKHYKISRIRGF 190
KI VV + + S+ QRK +++ KH I + GF
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGF 1708
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.4 bits (53), Expect = 5.0
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 137 KTPTVVHKHY-KISRIRGFYIRKVQYTQQNFHDRLSRIIQDSQS*MMSIHFMLIS 298
+ P + H Y ++ +R F+ + Y NFH L R++ S S+H + +S
Sbjct: 311 RPPFIQHDTYGRLKPLRCFFNDDISY---NFHLLLGRLLDCGVSIYKSVHSLTVS 362
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 5.0
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = +1
Query: 148 SRSQTL*NIKNTWVLY*KSAIYPAELPRPTVQNYSGFPKLDDVHPFYADLMYVLYAKDHY 327
S S + N W Y + L R ++ F +++ V P Y D LYA ++
Sbjct: 148 SMSGHIANWPQQWASYHATKAAVKHLARALAVEWAPFARVNSVSPGYIDTDLTLYADENL 207
Query: 328 K 330
+
Sbjct: 208 R 208
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 155 HKHYKISRIRGFYIRKVQYTQQNFHDRLSRI 247
H+H+K+SR R YI+ N D +++I
Sbjct: 230 HQHWKVSRDRKQYIKNFHNESVNNVDLINKI 260
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 265 TLGILNNSGQSVVEVLLGILHFSNIKPTYS 176
T+GI N++ + + +L +LH NI+ +S
Sbjct: 330 TVGIDNDTCECIFSLLAALLHIGNIEVKHS 359
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 190 KPTYS*YFIMFVNDCRSFPLCFR*N 116
+PTY+ YFI ++D R C+ N
Sbjct: 95 RPTYTHYFIRLLHDKRLLQKCYTQN 119
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 316 WRIIRT*DQHKMDGHHLTLGILNNSGQSVVEVLLGILHFSNIKP 185
W +I + + +DG + + N G+ ++ + I+H N+KP
Sbjct: 361 WDLIS--EMYWLDGGKVYYDLFNKVGEPILPLTEWIMHQPNVKP 402
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 8.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 346 LNTARHLIDNVAKDYVRLLKYRDSLYRCEQLRRAAL 453
+ T +IDN+A D L+ DS R LR +L
Sbjct: 447 IQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSL 482
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 126 KHNGKLLQSFTNIIKYQEYVGFILEKCNIPSRTSTTDCPELF 251
+H + + + +++IK V I C++PS + DC ++F
Sbjct: 223 QHFIRFIHTLSSLIKCTTSVHLIC-MCSVPSTLFSRDCEQIF 263
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 24.6 bits (51), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Frame = -2
Query: 274 HHLTLGILNNSGQSVVEVLLGI-----LHFSNIK 188
H LT +LN G + EVL+ + ++FSN K
Sbjct: 795 HFLTSSLLNEQGLTAFEVLMTVWCDNFVYFSNFK 828
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 482 GRFRMVAMRPRAARLSCSHRYNESLYF 402
GR R RP ++ YNES YF
Sbjct: 370 GRGRQADQRPNNREIALQTGYNESKYF 396
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 265 TLGILNNSGQSVVEVLLGILHFSNIK 188
TLG NN S+ ++ ILH NI+
Sbjct: 335 TLGFDNNEIHSLFLIIASILHIGNIE 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,495
Number of Sequences: 5004
Number of extensions: 41244
Number of successful extensions: 124
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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