Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00624X
(509 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0668 - 4882174-4884204 130 6e-31
07_01_0075 - 558829-560859 127 4e-30
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 34 0.076
08_02_1305 - 26013022-26014107 28 3.8
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 28 3.8
04_04_1221 + 31845938-31847038 27 6.6
03_01_0553 - 4123634-4123690,4123756-4124469 27 6.6
12_01_0647 - 5485100-5487028 27 8.8
08_02_1310 - 26037025-26038074 27 8.8
>06_01_0668 - 4882174-4884204
Length = 676
Score = 130 bits (314), Expect = 6e-31
Identities = 57/84 (67%), Positives = 71/84 (84%)
Frame = +1
Query: 256 FPKLDDVHPFYADLMYVLYAKDHYKLRLGQLNTARHLIDNVAKDYVRLLKYRDSLYRCEQ 435
FP+LDD+HPFY DL++VLY KDHYKL LGQ+NTAR++I +AKDY+RLLKY DSLYRC+
Sbjct: 69 FPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYGDSLYRCKC 128
Query: 436 LRRAALGRMATILKRPRANLTYLE 507
L+ AALGRM T++KR +L YLE
Sbjct: 129 LKVAALGRMCTVIKRISPSLAYLE 152
Score = 103 bits (247), Expect = 8e-23
Identities = 47/68 (69%), Positives = 56/68 (82%)
Frame = +2
Query: 53 MSLYNFKKIAVVPTATDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVQYTQQNFHD 232
M YNFK+I VVP DFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKV+YTQ NF++
Sbjct: 1 MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYSISRIRQFYMRKVKYTQSNFYE 60
Query: 233 RLSRIIQD 256
+LS +I D
Sbjct: 61 KLSTVIDD 68
>07_01_0075 - 558829-560859
Length = 676
Score = 127 bits (307), Expect = 4e-30
Identities = 56/84 (66%), Positives = 70/84 (83%)
Frame = +1
Query: 256 FPKLDDVHPFYADLMYVLYAKDHYKLRLGQLNTARHLIDNVAKDYVRLLKYRDSLYRCEQ 435
FP+LD +HPFY DL++VLY KDHYKL LGQ+NTAR++I +AKDY+RLLKY DSLYRC+
Sbjct: 69 FPRLDGIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYGDSLYRCKC 128
Query: 436 LRRAALGRMATILKRPRANLTYLE 507
L+ AALGRM T++KR +L YLE
Sbjct: 129 LKVAALGRMCTVIKRISPSLAYLE 152
Score = 103 bits (246), Expect = 1e-22
Identities = 47/68 (69%), Positives = 56/68 (82%)
Frame = +2
Query: 53 MSLYNFKKIAVVPTATDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVQYTQQNFHD 232
M YNFK+I VVP DFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKV+YTQ NF++
Sbjct: 1 MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYAISRIRQFYMRKVKYTQSNFYE 60
Query: 233 RLSRIIQD 256
+LS +I D
Sbjct: 61 KLSTVIDD 68
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 33.9 bits (74), Expect = 0.076
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = +1
Query: 220 ELPRPTVQNYSGFPKLDDVHPFYADLMYVLYAKDHYKLRLGQLNTARHLIDNVAKDYVRL 399
E+ P FPK D+HP+ L+ + + + +Y+ + +++ R I++V K + +
Sbjct: 133 EISVPLRTYTENFPKRRDLHPYERSLIELTFGEGYYEKVIARVDALRKKINSVGKQHASV 192
Query: 400 LKYRDSLYRCEQLRRAALGR 459
SL + E R + GR
Sbjct: 193 C--AKSLTKREAEERLSEGR 210
>08_02_1305 - 26013022-26014107
Length = 361
Score = 28.3 bits (60), Expect = 3.8
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +1
Query: 208 IYPAELPRPTVQNYSGFPKLDDVHPFYADLMYVL--YAKDHYKLRLGQLNTARHLIDNVA 381
IY ELP + + G + F+ L+ + YA D K+ GQ L+DN+
Sbjct: 247 IYTDELPADAGKLHQGS---SSTNVFFKHLLAMADRYALDRLKIMCGQ-----RLLDNMT 298
Query: 382 KDYVRLLKYRDSLYRCEQLRRAAL 453
D V + +Y C +L+ +
Sbjct: 299 PDSVAAILVCAEMYNCPELKNKCI 322
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 140 TPTVVHKHYKISRIRGFYIRKVQYTQQNFHDRLSR 244
TP H H KI IRG Y++K Q + H R SR
Sbjct: 161 TPLSGHGHTKIGVIRGVYLQKEQ--DKPGHSRYSR 193
>04_04_1221 + 31845938-31847038
Length = 366
Score = 27.5 bits (58), Expect = 6.6
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 187 VLY*KSAIYPAELPRPTVQNYSGFPKLDDVHP--FYADLMYVLYAKDHYKLRLGQLNTAR 360
VL +S ++ AEL P +N + K+DD+ P F A L ++ + R G+ +
Sbjct: 211 VLAFRSPVFKAELFGPMKENGTQCIKIDDMEPEVFEALLHFIYTDRLPDSCRDGKAAAMQ 270
Query: 361 HLI---DNVAKDYVRLL 402
HL+ D D +RL+
Sbjct: 271 HLLVAADRYGVDRLRLI 287
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 289 ADLMYVLYAKDHYKLRLGQLNTARHLIDNVAKDYVRLLKYRDSLYRCEQLRRAALGRMAT 468
A + ++L A D Y + +L R L + + + V + C QLR+A +G +A+
Sbjct: 267 AAMQHLLVAADRYGVDRLRLICERRLSETIDVETVATTLVLAEQHHCSQLRQACIGFVAS 326
>03_01_0553 - 4123634-4123690,4123756-4124469
Length = 256
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 407 IEIRCIGANSSDVRLWVAWPPS*NGPALILH 499
+ +R G +++ VR+W PS P L+LH
Sbjct: 56 VHLRLPGTDATTVRVWCPAAPSAKPPLLLLH 86
>12_01_0647 - 5485100-5487028
Length = 642
Score = 27.1 bits (57), Expect = 8.8
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 244 NYSGFPKLDDVHPFYADLMYV--LYAKDHYKLRLGQLNTARHLIDNVAKDYVR-LLKYRD 414
N+ L+ P YA+L + AKD LG A HL DN+ +Y R L+Y D
Sbjct: 370 NHFALGSLEVGAPNYAELQPIGAQIAKDLSWSPLGTKVAALHLRDNLTAEYWRKFLQYVD 429
Query: 415 SLYR 426
+ R
Sbjct: 430 NFQR 433
>08_02_1310 - 26037025-26038074
Length = 349
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 301 YVLYAKDHYKLRLGQLNTARHLIDNVAKDYVRLLKYRDSLYRCEQLRRAALGRMA 465
++L A + Y+L +L + + L+DNV + V + Y C +L++ L +A
Sbjct: 260 HLLAAAERYELGGLKLLSTKKLLDNVTPENVAGIIVCAETYGCPELKKKCLDYLA 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,761,680
Number of Sequences: 37544
Number of extensions: 245107
Number of successful extensions: 565
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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