Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00624X
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)               71   7e-13
SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   2.2  
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)         29   2.2  
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)                   29   2.9  
SB_21615| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_35671| Best HMM Match : zf-C3HC4 (HMM E-Value=0.01)                 27   9.0  

>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 38/71 (53%), Positives = 47/71 (66%)
 Frame = +1

Query: 259 PKLDDVHPFYADLMYVLYAKDHYKLRLGQLNTARHLIDNVAKDYVRLLKYRDSLYRCEQL 438
           P   DVHPFYADLM VLY KDHYKL LGQ+NTAR+LID +      + +   SL   EQ+
Sbjct: 13  PTAKDVHPFYADLMNVLYDKDHYKLALGQINTARNLIDKMC---TIMKRQNQSLQYLEQV 69

Query: 439 RRAALGRMATI 471
           R+  L R+ +I
Sbjct: 70  RQ-HLSRLPSI 79



 Score = 30.3 bits (65), Expect = 0.96
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +2

Query: 53  MSLYNFKKIAVVPTATD 103
           M+ YNFKKI VVPTA D
Sbjct: 1   MAHYNFKKITVVPTAKD 17


>SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 330

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 220 ELPRPTVQNYSGFPKLDDVHPFYADLMYV 306
           ELP PT     G+P  D+V+P  AD++ V
Sbjct: 124 ELPLPTSFANHGWPPKDEVYPLNADILKV 152


>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
          Length = 879

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = +3

Query: 141 LLQSFTNIIKYQEYVGFILEKCNIPSRTSTTDCPEL 248
           L++S+ +IIK QE  GFI EK   PS  S  DC E+
Sbjct: 534 LMKSYDDIIKEQEARGFI-EKA--PSTPSLNDCLEV 566


>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
          Length = 380

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 313 AKDHYKLRLGQLNTARHLIDNVAK-DYVRLLKYRDSLYRCEQLRR 444
           AKD  K    ++ +A +  D+ A  D VR L YR+S+Y  + L R
Sbjct: 140 AKDKPKPGASEMTSADYYFDSYAHFDEVRTLTYRNSMYHNKHLFR 184


>SB_21615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 157 VNDCRSFPLCFR*NYVYKVRSCRD 86
           VN C  FP+C +     K++SCRD
Sbjct: 38  VNRCNRFPICVKKVRKSKLQSCRD 61


>SB_35671| Best HMM Match : zf-C3HC4 (HMM E-Value=0.01)
          Length = 527

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 56  SLYNFKKIAV-VPTATDFIDIILSKTQRKTPTVVHKHYKISRIRGFY 193
           S+ +F+ I V + T    +  I  K Q+KT  ++  HY I ++   Y
Sbjct: 32  SITSFEFIVVFIITYLSHLSGITVKLQKKTSDIIEAHYMIEQVLALY 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,167,065
Number of Sequences: 59808
Number of extensions: 299094
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)