Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00624X
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.6  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   7.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 314 AYNTYMRSA*NGWTSSNFGNPE*FWTVGRGSS 219
           AYNTY R+A   +       P+    + RG+S
Sbjct: 418 AYNTYGRNAGLRYRGPKQNKPKVLHAIRRGAS 449


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 217 AELPRPTVQNYSGFPKLDDVHP 282
           A+L  P +++Y G  K  D HP
Sbjct: 62  ADLFDPIIEDYHGGFKKTDKHP 83


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 59  LYNFKKIAVVPTATD 103
           LYN K+ A +  ATD
Sbjct: 171 LYNCKRTATITAATD 185


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 447 GSGSHGHHPE 476
           G G +GHHP+
Sbjct: 277 GLGHYGHHPD 286


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 217 AELPRPTVQNYSGFPKLDDVHP 282
           A+L  P +++Y G  K  D HP
Sbjct: 78  ADLFDPIIEDYHGGFKKTDKHP 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,306
Number of Sequences: 438
Number of extensions: 3009
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)