Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00623X
(595 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9NPE3 Cluster: H/ACA ribonucleoprotein complex subunit... 93 4e-18
UniRef50_Q9V5P6 Cluster: H/ACA ribonucleoprotein complex subunit... 89 1e-16
UniRef50_Q93XX8 Cluster: H/ACA ribonucleoprotein complex subunit... 82 8e-15
UniRef50_Q019V2 Cluster: H/ACA snoRNP complex, subunit NOP10; n=... 66 6e-10
UniRef50_UPI0000498FA1 Cluster: conserved hypothetical protein; ... 48 1e-04
UniRef50_A2EP66 Cluster: Nucleolar RNA-binding protein, putative... 46 9e-04
UniRef50_Q2FPD6 Cluster: Nucleolar RNA-binding protein Nop10p; n... 46 9e-04
UniRef50_A6UUW5 Cluster: Nucleolar RNA-binding protein Nop10p; n... 42 0.014
UniRef50_Q97Z78 Cluster: Ribosome biogenesis protein Nop10; n=2;... 41 0.025
UniRef50_Q8U1R4 Cluster: Ribosome biogenesis protein Nop10; n=7;... 36 0.54
UniRef50_A0B683 Cluster: Nucleolar RNA-binding protein Nop10p; n... 36 0.95
UniRef50_Q8TT00 Cluster: Ribosome biogenesis protein Nop10; n=7;... 36 0.95
UniRef50_Q8ZTY6 Cluster: Ribosome biogenesis protein Nop10; n=4;... 35 1.3
UniRef50_A0Q1X6 Cluster: Putative uncharacterized protein; n=1; ... 35 1.7
UniRef50_Q05E71 Cluster: Small nucleolar RNP protein Nop10p; n=3... 35 1.7
UniRef50_A4WE86 Cluster: Regulatory protein, IclR; n=6; Enteroba... 33 3.8
UniRef50_Q8TY85 Cluster: Ribosome biogenesis protein Nop10; n=2;... 33 5.0
UniRef50_Q9HAX1 Cluster: Desmocollin 3; n=2; Catarrhini|Rep: Des... 32 8.8
>UniRef50_Q9NPE3 Cluster: H/ACA ribonucleoprotein complex subunit 3;
n=25; Eukaryota|Rep: H/ACA ribonucleoprotein complex
subunit 3 - Homo sapiens (Human)
Length = 64
Score = 93.1 bits (221), Expect = 4e-18
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = +2
Query: 83 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLT 253
M+L+YYLN++GDR YTL DP G+ T SAHPARFSP+DKYSRHRI IKKRF +L+T
Sbjct: 1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMT 57
>UniRef50_Q9V5P6 Cluster: H/ACA ribonucleoprotein complex subunit 3;
n=13; Eukaryota|Rep: H/ACA ribonucleoprotein complex
subunit 3 - Drosophila melanogaster (Fruit fly)
Length = 64
Score = 88.6 bits (210), Expect = 1e-16
Identities = 41/57 (71%), Positives = 45/57 (78%)
Frame = +2
Query: 83 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLT 253
MYL Y +N+ GDR YTL G+PTLSAHPARFSPEDKYSR R+ IKKRFGLLLT
Sbjct: 1 MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLT 57
>UniRef50_Q93XX8 Cluster: H/ACA ribonucleoprotein complex subunit
3-like protein; n=35; Eukaryota|Rep: H/ACA
ribonucleoprotein complex subunit 3-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 82.2 bits (194), Expect = 8e-15
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +2
Query: 83 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTHNL 262
MYL+ Y+N+KG++ YT P G T SAHPARFSP+DKYS+ R+++KKRFGLL T N
Sbjct: 1 MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60
Query: 263 NL 268
L
Sbjct: 61 PL 62
>UniRef50_Q019V2 Cluster: H/ACA snoRNP complex, subunit NOP10; n=2;
Eukaryota|Rep: H/ACA snoRNP complex, subunit NOP10 -
Ostreococcus tauri
Length = 91
Score = 66.1 bits (154), Expect = 6e-10
Identities = 35/69 (50%), Positives = 43/69 (62%), Gaps = 13/69 (18%)
Frame = +2
Query: 86 YLRYYLNDKGDREYTLATID-------------PFGKPTLSAHPARFSPEDKYSRHRIII 226
YL YY ++KG+R YTL P G PT SAHPARFSP+DK+S+ R+ +
Sbjct: 16 YLMYYTDEKGERVYTLKVRSAKRRKPRAGDKTAPDGTPTHSAHPARFSPDDKFSKQRVAL 75
Query: 227 KKRFGLLLT 253
KKRFGLL T
Sbjct: 76 KKRFGLLPT 84
>UniRef50_UPI0000498FA1 Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 59
Score = 48.4 bits (110), Expect = 1e-04
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +2
Query: 89 LRYYLNDKGDREYTLATIDPFGKPTL-SAHPARFSPEDKYSRHRIIIKKRFGLLLTHNLN 265
L YY ++ ++YT+ T P + SAHPA+FSP D YS++RI KK FGLL T N
Sbjct: 2 LLYYCDNC--KQYTMKTECPQCNGYVRSAHPAKFSPVDPYSKYRIATKKEFGLLPTSTKN 59
>UniRef50_A2EP66 Cluster: Nucleolar RNA-binding protein, putative;
n=2; Trichomonas vaginalis G3|Rep: Nucleolar RNA-binding
protein, putative - Trichomonas vaginalis G3
Length = 83
Score = 45.6 bits (103), Expect = 9e-04
Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 119 REYTLATIDP-FGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLL 247
++YTL P G T SAHPARFSPEDK S RI K +F LL
Sbjct: 31 KQYTLKQKCPRCGGQTRSAHPARFSPEDKNSAERIQTKAKFNLL 74
>UniRef50_Q2FPD6 Cluster: Nucleolar RNA-binding protein Nop10p; n=1;
Methanospirillum hungatei JF-1|Rep: Nucleolar
RNA-binding protein Nop10p - Methanospirillum hungatei
(strain JF-1 / DSM 864)
Length = 49
Score = 45.6 bits (103), Expect = 9e-04
Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +2
Query: 116 DREYTLA-TIDPFGKPTLSAHPARFSPEDKYSRHRIIIK 229
D YTL+ T GKPT++ HPAR+SP+D+Y ++R +I+
Sbjct: 11 DNLYTLSETCSSCGKPTITPHPARYSPDDRYGKYRRMIR 49
>UniRef50_A6UUW5 Cluster: Nucleolar RNA-binding protein Nop10p; n=1;
Methanococcus aeolicus Nankai-3|Rep: Nucleolar
RNA-binding protein Nop10p - Methanococcus aeolicus
Nankai-3
Length = 51
Score = 41.5 bits (93), Expect = 0.014
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +2
Query: 119 REYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKK 232
+ YTL TI G+ T++ P R+SP DKY ++R ++KK
Sbjct: 10 KNYTLNTICQCGEKTITVKPPRYSPTDKYGKYRRMLKK 47
>UniRef50_Q97Z78 Cluster: Ribosome biogenesis protein Nop10; n=2;
Sulfolobus|Rep: Ribosome biogenesis protein Nop10 -
Sulfolobus solfataricus
Length = 56
Score = 40.7 bits (91), Expect = 0.025
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 116 DREYTLA-TIDPFGKPTLSAHPARFSPEDKYSRHRIIIKK 232
D YT T G T+ HP+RFSPEDKY ++RI +KK
Sbjct: 11 DNIYTFKDTCQICGSKTVIPHPSRFSPEDKYVKYRIELKK 50
>UniRef50_Q8U1R4 Cluster: Ribosome biogenesis protein Nop10; n=7;
Archaea|Rep: Ribosome biogenesis protein Nop10 -
Pyrococcus furiosus
Length = 60
Score = 36.3 bits (80), Expect = 0.54
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 125 YTLATIDPF-GKPTLSAHPARFSPEDKYSRHR 217
YTL + P G+ T AHP RFSPED Y +R
Sbjct: 14 YTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYR 45
>UniRef50_A0B683 Cluster: Nucleolar RNA-binding protein Nop10p; n=1;
Methanosaeta thermophila PT|Rep: Nucleolar RNA-binding
protein Nop10p - Methanosaeta thermophila (strain DSM
6194 / PT) (Methanothrixthermophila (strain DSM 6194 /
PT))
Length = 60
Score = 35.5 bits (78), Expect = 0.95
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 119 REYTLATIDP-FGKPTLSAHPARFSPEDKYSRHR 217
R YTL P G T PARFSPED+Y R+R
Sbjct: 13 RLYTLKETCPRCGSHTTGTKPARFSPEDRYGRYR 46
>UniRef50_Q8TT00 Cluster: Ribosome biogenesis protein Nop10; n=7;
Euryarchaeota|Rep: Ribosome biogenesis protein Nop10 -
Methanosarcina acetivorans
Length = 51
Score = 35.5 bits (78), Expect = 0.95
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 125 YTLATIDPF-GKPTLSAHPARFSPEDKYSRHRIIIKK 232
YTL P G TL A PARFSP+D Y ++R + KK
Sbjct: 14 YTLREKCPVCGGVTLPAIPARFSPQDPYGKYRRLAKK 50
>UniRef50_Q8ZTY6 Cluster: Ribosome biogenesis protein Nop10; n=4;
Archaea|Rep: Ribosome biogenesis protein Nop10 -
Pyrobaculum aerophilum
Length = 72
Score = 35.1 bits (77), Expect = 1.3
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 173 HPARFSPEDKYSRHRIIIKKRFGLL 247
HP +FSPEDKY ++RI+ K G L
Sbjct: 32 HPPKFSPEDKYQKYRILQKLLMGKL 56
>UniRef50_A0Q1X6 Cluster: Putative uncharacterized protein; n=1;
Clostridium novyi NT|Rep: Putative uncharacterized
protein - Clostridium novyi (strain NT)
Length = 161
Score = 34.7 bits (76), Expect = 1.7
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -2
Query: 405 FVRAFVFCCMLYKSCVP*ILKIIVKMYQNLDHFGNFQ 295
++ AF+ + KSC P I ++IV++ NLD + NF+
Sbjct: 86 YMEAFMNYSLNIKSCYPNIYRVIVRLLMNLDKYENFE 122
>UniRef50_Q05E71 Cluster: Small nucleolar RNP protein Nop10p; n=3;
Desulfurococcaceae|Rep: Small nucleolar RNP protein
Nop10p - Aeropyrum pernix
Length = 58
Score = 34.7 bits (76), Expect = 1.7
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 152 GKPTLSAHPARFSPEDKYSRHRIIIKKRFGLL 247
G P HP RFSP++++ ++R ++K+ GL+
Sbjct: 25 GGPVAVPHPPRFSPDNRFIKYRYELQKKLGLI 56
>UniRef50_A4WE86 Cluster: Regulatory protein, IclR; n=6;
Enterobacteriaceae|Rep: Regulatory protein, IclR -
Enterobacter sp. 638
Length = 253
Score = 33.5 bits (73), Expect = 3.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 291 KSIFILMNRFRLCVSSRPNLFLII-ILCLEYLSSGEKRAGCAD 166
+S L+ R + +SS+PN LI I CL+YL S ++ GC +
Sbjct: 11 ESSHTLLKRMSVAMSSQPNQSLIDGIRCLQYLVSSDRAIGCRE 53
>UniRef50_Q8TY85 Cluster: Ribosome biogenesis protein Nop10; n=2;
Euryarchaeota|Rep: Ribosome biogenesis protein Nop10 -
Methanopyrus kandleri
Length = 66
Score = 33.1 bits (72), Expect = 5.0
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 173 HPARFSPEDKYSRHRIIIKKR 235
HP RFSPED Y ++R +KKR
Sbjct: 32 HPHRFSPEDPYGKYRRKLKKR 52
>UniRef50_Q9HAX1 Cluster: Desmocollin 3; n=2; Catarrhini|Rep:
Desmocollin 3 - Homo sapiens (Human)
Length = 316
Score = 32.3 bits (70), Expect = 8.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 555 HHDLE*CQGARSNVDNCKGPMYQWGRLRLPQ-SDKNH 448
HH L+ C+G + VDNC+ +W P+ +K H
Sbjct: 218 HHTLDSCRGGHTEVDNCRYTYSEWHSFTQPRLGEKLH 254
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 549,722,931
Number of Sequences: 1657284
Number of extensions: 10515105
Number of successful extensions: 19738
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19737
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -