Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00623X
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein Nop10|Sc...    81   9e-17
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   6.3  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.3  

>SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein
           Nop10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 64

 Score = 81.4 bits (192), Expect = 9e-17
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = +2

Query: 83  MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLT 253
           M+L YYLND+G R YTL  + P G+ T S+HPARFSP+DKYSR R  +KKRF +LLT
Sbjct: 1   MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLT 57


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 303 NFQCKSIFILMNRFRLCVSSRPNLFLIIILCLEYL 199
           N  C+S+  L   F L +S     ++++I C +YL
Sbjct: 402 NGYCQSLNFLAGFFLLFMSEEKAFWMLVITCRKYL 436


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 318 LDHFGNFQCKSIFILMNR 265
           +D FGN+ C+ +F+  +R
Sbjct: 508 IDPFGNYMCQKLFVYASR 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,568
Number of Sequences: 5004
Number of extensions: 48147
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)