Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00623X
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_58791| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_21238| Best HMM Match : 7tm_3 (HMM E-Value=6.5e-10)                 29   2.8  
SB_48927| Best HMM Match : DUF922 (HMM E-Value=0.62)                   27   8.6  

>SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 144 THLENQHCQHIQLVFLLKTNTQDT 215
           THL +QH  H Q +FL K + +DT
Sbjct: 85  THLLSQHLLHPQFIFLAKPDAEDT 108


>SB_58791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 89  LRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIII 226
           L+YY     +R +TLA + P+   T  A P   +P+   SR   II
Sbjct: 599 LKYYSGGARERRHTLAVLPPYHPST--ADPGSGAPQTNRSRFNSII 642


>SB_21238| Best HMM Match : 7tm_3 (HMM E-Value=6.5e-10)
          Length = 270

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 89  LRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIII 226
           L+YY     +R +TLA + P+   T  A P   +P+   SR   II
Sbjct: 190 LKYYSGGARERRHTLAVLPPYHPST--ADPGSGAPQTNRSRFNSII 233


>SB_48927| Best HMM Match : DUF922 (HMM E-Value=0.62)
          Length = 262

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 390 VFCCMLYKSCVP*ILKIIVKMYQNLDHFGNFQCK 289
           V  C+L  SCV  +L+        LDHFG+F  K
Sbjct: 4   VLVCLLLASCVA-LLRAAPTAPNFLDHFGSFHTK 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,066,900
Number of Sequences: 59808
Number of extensions: 334427
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)